myRT

myRT report for GCA_000714065.1_ASM71406v1

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Seq: JOQL01000071.1 (6594 bp)
Overview 1 RT 1: 54-5422 bp Neighborhood of RT #1 [54, 6498] RVT-GII Intron_maturas2 HNHc PRK13732 Spo0J Feature: gene Location: 54-245 bp Feature: gene Location: 382-630 bp Feature: gene Location: 1770-3557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1923-2754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 923-2754 bp Feature: domain Description: Intron_maturas2 Location: 2868-3126 bp Feature: domain Description: Intron_maturas2 Location: 2868-31 26 bp Feature: domain Description: HNHc Note: nucleases Location: 3300-3462 bp Feature: domain Description: HNHc Note: nucleases Location: 3300-3462 bp Feature: gene Location: 3767-4192 bp Feature: domain Description: PRK13732 Location: 3770-4190 bp Feature: domain Description: PRK1 3732 Location: 3770-41 90 bp Feature: gene Location: 4540-6498 bp Feature: domain Description: Spo0J Location: 4648-5422 bp Feature: domain Description: Spo0J Location: 4648-5422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: JOQL01000072.1 (5866 bp)
Overview 1 RT 1: 718-4364 bp Neighborhood of RT #1 [718, 4756] RVT-GII Intron_maturas2 HNHc DUF905 Spo0J Feature: gene Location: 718-2505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1702 bp Feature: domain Description: Intron_maturas2 Location: 1816-2074 bp Feature: domain Description: Intron_maturas2 Location: 1816-2 074 bp Feature: domain Description: HNHc Note: nucleases Location: 2248-2410 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 48-2 410 bp Feature: gene Location: 3193-3426 bp Feature: domain Description: DUF905 Location: 3223-3421 bp Feature: domain Description: DUF905 Location: 32 2 3-342 1 bp Feature: gene Location: 3482-4756 bp Feature: domain Description: Spo0J Location: 3590-4364 bp Feature: domain Description: Spo0J Location: 3590-4364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), Spo0J (COG1475), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JOQL01000097.1 (3287 bp)
Overview 1 RT 1: 58-2946 bp Neighborhood of RT #1 [58, 2948] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 58-270 bp Feature: domain Description: PHA02517 Location: 61-205 bp Feature: domain Description: PHA02517 Location: 61-205 bp Feature: gene Location: 877-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 5-1867 bp Feature: domain Description: GIIM Note: maturase Location: 1942-2140 bp Feature: domain Description: GIIM Note: maturase Location: 1942-2140 bp Feature: gene Location: 2577-2948 bp Feature: domain Description: PHA02517 Location: 2580-2946 bp Feature: domain Description: PHA02517 Location: 2580-2946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JOQL01000078.1 (5477 bp)
Overview 1 RT 1: 44-3474 bp Neighborhood of RT #1 [44, 3476] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 44-415 bp Feature: domain Description: PHA02517 Location: 47-413 bp Feature: domain Description: PHA02517 Location: 4 7-4 13 bp Feature: gene Location: 607-2115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1597 bp Feature: domain Description: GIIM Note: maturase Location: 1672-1870 bp Feature: domain Description: GIIM Note: maturase Location: 1672-1870 bp Feature: gene Location: 2722-3201 bp Feature: domain Description: PHA02517 Location: 2782-3136 bp Feature: domain Description: PHA02517 Location: 2782-3136 bp Feature: gene Location: 3201-3476 bp Feature: domain Description: InsE Location: 3222-3474 bp Feature: domain Description: InsE Location: 3222-34 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: JOQL01000069.1 (7065 bp)
Overview 1 RT 1: 718-4370 bp Neighborhood of RT #1 [718, 5446] RVT-GII Intron_maturas2 HNHc PRK13732 Spo0J Feature: gene Location: 718-2505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1702 bp Feature: domain Description: Intron_maturas2 Location: 1816-2074 bp Feature: domain Description: Intron_maturas2 Location: 1816-2074 bp Feature: domain Description: HNHc Note: nucleases Location: 2248-2410 bp Feature: domain Description: HNHc Note: nucleases Location: 2248-2410 bp Feature: gene Location: 2715-3140 bp Feature: domain Description: PRK13732 Location: 2718-3138 bp Feature: domain Description: PRK13732 Location: 2718-3138 bp Feature: gene Location: 3488-5446 bp Feature: domain Description: Spo0J Location: 3596-4370 bp Feature: domain Description: Spo0J Location: 35 96-4370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), Spo0J (COG1475), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JOQL01000005.1 (256133 bp)
Overview 1 RT 1: 252404-256011 bp Neighborhood of RT #1 [252404, 256076] PRK09692 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 252404-252955 bp Feature: domain Description: PRK09692 Location: 252410-252953 bp Feature: domain Description: PRK096 92 Location: 252410-252953 bp Feature: gene Location: 253186-253557 bp Feature: domain Description: PHA02517 Location: 253189-253555 bp Feature: domain Description: PHA02517 Location: 253189-253555 bp Feature: gene Location: 253749-255257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254007-254739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254007-254739 bp Feature: domain Description: GIIM Note: maturase Location: 254814-255012 bp Feature: domain Description: GIIM Note: maturase Location: 254814-255012 bp Feature: gene Location: 255864-256076 bp Feature: domain Description: PHA02517 Location: 255867-256011 bp Feature: domain Description: PHA02517 Location: 25586 7-256 011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JOQL01000091.1 (3844 bp)
Overview 1 RT 1: 369-3799 bp Neighborhood of RT #1 [369, 3801] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 369-644 bp Feature: domain Description: InsE Location: 390-642 bp Feature: domain Description: InsE Location: 390-642 bp Feature: gene Location: 644-1123 bp Feature: domain Description: PHA02517 Location: 704-1058 bp Feature: domain Description: PHA02517 Location: 7 04-1058 bp Feature: gene Location: 1730-3238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1988-2720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1988-27 20 bp Feature: domain Description: GIIM Note: maturase Location: 2795-2993 bp Feature: domain Description: GIIM Note: maturase Location: 27 95-2993 bp Feature: gene Location: 3430-3801 bp Feature: domain Description: PHA02517 Location: 3433-3799 bp Feature: domain Description: PHA02517 Location: 3433-37 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)