myRT

myRT report for GCA_000714135.1_ASM71413v1

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Seq: JOQO01000134.1 (2231 bp)
Overview 1 RT 1: 83-1886 bp Neighborhood of RT #1 [83, 2158] TnpB_IS66 InsE RVT-GII Feature: gene Location: 83-379 bp Ori: KEL33867.1 Feature: domain Description: TnpB_IS66 Location: 86-347 bp Feature: domain Description: TnpB_IS66 Location: 86-347 bp Feature: gene Location: 430-864 bp Ori: KEL33868.1 Feature: domain Description: InsE Location: 451-844 bp Feature: domain Description: InsE Location: 451 -844 bp Feature: gene Location: 896-2158 bp Ori: KEL33869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 54-1 886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII

Seq: JOQO01000165.1 (1558 bp)
Overview 1 RT 1: 43-1557 bp Neighborhood of RT #1 [43, 1558] InsG RVT-GII Feature: gene Location: 43-1155 bp Ori: KEL32290.1 Feature: domain Description: InsG Location: 46-1084 bp Feature: domain Description: InsG Location: 46-1084 bp Feature: gene Location: 1365-1558 bp Ori: KEL32291.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461-1557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461-1557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII

Seq: JOQO01000111.1 (3937 bp)
Overview 1 RT 1: 322-3680 bp Neighborhood of RT #1 [322, 3904] PRK09928 PHA02517 RVT-GII GIIM Feature: gene Location: 322-2319 bp Ori: KEL35530.1 Feature: domain Description: PRK09928 Location: 337-2317 bp Feature: domain Description: PRK09928 Location: 3 3 7-23 17 bp Feature: gene Location: 2730-3146 bp Ori: KEL35531.1 Feature: domain Description: PHA02517 Location: 2733-3135 bp Feature: domain Description: PHA02517 Location: 273 3 -3 13 5 bp Feature: gene Location: 3299-3904 bp Ori: KEL35532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314-3386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 14-3 3 86 bp Feature: domain Description: GIIM Note: maturase Location: 3461-3680 bp Feature: domain Description: GIIM Note: maturase Location: 3 461-3 680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09928 (choline transport protein BetT; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JOQO01000061.1 (21300 bp)
Overview 1 RT 1: 11061-16009 bp Neighborhood of RT #1 [11061, 16044] DUF1380 RVT_N RVT-GII GIIM HNHc DUF932 Feature: gene Location: 11061-11483 bp Ori: KEL40005.1 Feature: domain Description: DUF1380 Location: 11064-11358 bp Feature: domain Description: DUF1380 Location: 11064 -11358 bp Feature: gene Location: 11667-11876 bp Feature: gene Location: 11949-13616 bp Ori: KEL40007.1 Feature: domain Description: RVT_N Location: 11997-12234 bp Feature: domain Description: RVT_N Location: 11997-12234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12285-12927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12285-12927 bp Feature: domain Description: GIIM Note: maturase Location: 12978-13212 bp Feature: domain Description: GIIM Note: maturase Location: 12978-13212 bp Feature: domain Description: HNHc Note: nucleases Location: 13422-13581 bp Feature: domain Description: HNHc Note: nucleases Location: 134 22-13581 bp Feature: gene Location: 14818-15114 bp Feature: gene Location: 15223-16044 bp Ori: KEL40009.1 Feature: domain Description: DUF932 Location: 15331-16009 bp Feature: domain Description: DUF932 Location: 15331-16009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF932 (pfam06067)

Seq: JOQO01000085.1 (8997 bp)
Overview 1 RT 1: 34-2141 bp Neighborhood of RT #1 [34, 2257] RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 34-639 bp Ori: KEL37132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-121 bp Feature: domain Description: GIIM Note: maturase Location: 196-415 bp Feature: domain Description: GIIM Note: maturase Location: 196-415 bp Feature: gene Location: 792-962 bp Ori: KEL37133.1 Feature: domain Description: PHA02517 Location: 795-927 bp Feature: domain Description: PHA025 17 Location: 795 -927 bp Feature: gene Location: 1181-2257 bp Ori: KEL37134.1 Feature: domain Description: COG3547 Location: 1220-2141 bp Feature: domain Description: COG35 47 Location: 1220-2141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )

Seq: JOQO01000176.1 (1221 bp)
Overview 1 RT 1: 34-1188 bp Neighborhood of RT #1 [34, 1190] RVT-GII GIIM PHA02517 Feature: gene Location: 34-639 bp Ori: KEL31897.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-121 bp Feature: domain Description: GIIM Note: maturase Location: 196-415 bp Feature: domain Description: GIIM Note: maturase Location: 196 -415 bp Feature: gene Location: 831-1190 bp Ori: KEL31898.1 Feature: domain Description: PHA02517 Location: 834-1188 bp Feature: domain Description: PHA02517 Location: 834-1188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)