myRT

myRT report for GCA_000714265.1_ASM71426v1

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Seq: JOQV01000016.1 (103529 bp)
Overview 1 RT 1: 38441-43328 bp Neighborhood of RT #1 [38441, 43328] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 38441-39340 bp Ori: KEL72496.1 Feature: domain Description: YhhI Location: 38447-38732 bp Feature: domain Description: YhhI Location: 38447-38732 bp Feature: domain Description: YhhI Location: 38789-39143 bp Feature: domain Description: YhhI Location: 38789-391 43 bp Feature: domain Description: YhhI Location: 39143-39323 bp Feature: domain Description: YhhI Location: 391 43-39323 bp Feature: gene Location: 39368-39508 bp Feature: gene Location: 39872-41122 bp Ori: KEL72498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40076-40733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40076-40733 bp Feature: domain Description: GIIM Note: maturase Location: 40814-41036 bp Feature: domain Description: GIIM Note: maturase Location: 4081 4-41 036 bp Feature: gene Location: 41569-42705 bp Ori: KEL72499.1 Feature: domain Description: YhhI Location: 41572-41935 bp Feature: domain Description: YhhI Location: 41 572-41 935 bp Feature: domain Description: YhhI Location: 41992-42346 bp Feature: domain Description: YhhI Location: 41 992-42346 bp Feature: domain Description: YhhI Location: 42364-42607 bp Feature: domain Description: YhhI Location: 42364-42607 bp Feature: gene Location: 42825-43328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: JOQV01000018.1 (94517 bp)
Overview 1 RT 1: 37-2955 bp Neighborhood of RT #1 [37, 2957] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 37-1545 bp Ori: KEL72263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 95-102 7 bp Feature: domain Description: GIIM Note: maturase Location: 1102-1300 bp Feature: domain Description: GIIM Note: maturase Location: 1102 -1300 bp Feature: gene Location: 2152-2631 bp Ori: KEL72264.1 Feature: domain Description: PHA02517 Location: 2212-2566 bp Feature: domain Description: PHA02 517 Location: 2 2 12 -2 566 bp Feature: gene Location: 2631-2957 bp Ori: KEL72265.1 Feature: domain Description: InsE Location: 2634-2955 bp Feature: domain Description: InsE Location: 2 634-2 955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JOQV01000035.1 (12098 bp)
Overview 1 RT 1: 9011-11737 bp Neighborhood of RT #1 [9011, 11737] RVT-GII GIIM Feature: gene Location: 9011-9268 bp Feature: gene Location: 9590-9724 bp Feature: gene Location: 9919-11427 bp Ori: KEL69159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10177-10909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10177-10909 bp Feature: domain Description: GIIM Note: maturase Location: 10984-11182 bp Feature: domain Description: GIIM Note: maturase Location: 10984-11182 bp Feature: gene Location: 11624-11737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JOQV01000001.1 (796714 bp)
Overview 1 RT 1: 372460-377779 bp Neighborhood of RT #1 [372460, 377805] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 372460-373722 bp Ori: KEL76750.1 Feature: domain Description: YesM Location: 372973-373714 bp Feature: domain Description: YesM Location: 372973-373714 bp Feature: gene Location: 373829-373948 bp Feature: gene Location: 374272-374754 bp Ori: KEL76752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374281-374521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374 281-374 521 bp Feature: domain Description: GIIM Note: maturase Location: 374569-374749 bp Feature: domain Description: GIIM Note: maturase Location: 374 569-374 74 9 bp Feature: gene Location: 374821-375360 bp Ori: KEL76753.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375151-375229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375151-375229 bp Feature: gene Location: 375846-376751 bp Feature: gene Location: 376888-377805 bp Ori: KEL76755.1 Feature: domain Description: PFLE_PFLC Location: 376924-377779 bp Feature: domain Description: PFLE_PFLC Location: 376924 -377779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: JOQV01000030.1 (15449 bp)
Overview 1 RT 1: 10306-15268 bp Neighborhood of RT #1 [10306, 15405] LacI PBP1_GntR RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 10306-11337 bp Ori: KEL69580.1 Feature: domain Description: LacI Location: 10348-10483 bp Feature: domain Description: LacI Location: 10348-10483 bp Feature: domain Description: PBP1_GntR Location: 10522-11332 bp Feature: domain Description: PBP1_GntR Location: 105 22-11332 bp Feature: gene Location: 11419-11556 bp Feature: gene Location: 11864-12670 bp Ori: KEL69582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11867-12230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11867-12230 bp Feature: domain Description: GIIM Note: maturase Location: 12278-12500 bp Feature: domain Description: GIIM Note: maturase Location: 12278-125 00 bp Feature: gene Location: 12688-13122 bp Ori: KEL69583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12880-13096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12880-13096 bp Feature: gene Location: 14009-14380 bp Feature: gene Location: 14638-15405 bp Ori: KEL69585.1 Feature: domain Description: Tra5 Location: 14743-15268 bp Feature: domain Description: Tra5 Location: 14743-15 268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: JOQV01000005.1 (299994 bp)
Overview 1 RT 1: 362-3893 bp Neighborhood of RT #1 [362, 3898] RVT-GII GIIM PHA02517 PRK15194 Feature: gene Location: 362-475 bp Feature: gene Location: 672-2180 bp Ori: KEL74489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-16 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2309-2749 bp Ori: KEL74490.1 Feature: domain Description: PHA02517 Location: 2312-2720 bp Feature: domain Description: PHA02517 Location: 2312-2720 bp Feature: gene Location: 3335-3898 bp Ori: KEL74491.1 Feature: domain Description: PRK15194 Location: 3338-3893 bp Feature: domain Description: PRK15194 Location: 3338-3893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK15194 (type 1 fimbrial protein subunit FimA)