myRT

myRT report for GCA_000714875.1_MSHR5855_assembly

Download annotations/find similar RTs

Seq: JMMV01000085.1 Burkholderia pseudomallei MSHR5855 5855-620bp_244, whole genome shotgun sequence (79018 bp)
Overview 1 RT 1: 14546-17807 bp Neighborhood of RT #1 [14546, 17824] RVT-Retrons AAA_21 AAA_21 PinE Feature: gene Location: 14546-15514 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14675-15233 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4675-1 5233 bp Feature: gene Location: 15511-16854 bp Feature: domain Description: AAA_21 Location: 15592-15742 bp Feature: domain Description: AAA_21 Location: 1 5592-1 5742 bp Feature: domain Description: AAA_21 Location: 16084-16255 bp Feature: domain Description: AAA_21 Location: 1 6084-1 6255 bp Feature: gene Location: 17249-17824 bp Feature: domain Description: PinE Location: 17258-17807 bp Feature: domain Description: PinE Location: 1 7258-1 7807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_21 (pfam13304), PinE (COG1961)

Seq: JMMV01000144.1 Burkholderia pseudomallei MSHR5855 5855-620bp_304, whole genome shotgun sequence (3702 bp)
Overview 1 RT 1: 1-3702 bp Neighborhood of RT #1 [1, 3702] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 1-832 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10-697 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10-697 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 718-829 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 718-82 9 bp Feature: gene Location: 980-2242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1841 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2135 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2 135 bp Feature: gene Location: 2760-3344 bp Feature: domain Description: COG3436 Location: 3018-3321 bp Feature: domain Description: COG3436 Location: 3018-332 1 bp Feature: gene Location: 3459-3702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388)