myRT

myRT report for GCA_000714895.1_JA03_HGAP2

Download annotations/find similar RTs

Seq: JMIZ01000008.1 Escherichia coli strain UCD_JA03_pb contig_8, whole genome shotgun sequence (3249757 bp)
Overview 1 RT 1: 2863365-2867247 bp Neighborhood of RT #1 [2863365, 2867252] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 2863365-2864081 bp Feature: domain Description: rph Location: 2863368-2864076 bp Feature: domain Description: rph Location: 2863368-2864076 bp Feature: gene Location: 2864147-2864788 bp Feature: domain Description: pyrE Location: 2864150-2864783 bp Feature: domain Description: pyrE Location: 28641 50-2864783 bp Feature: gene Location: 2865086-2866045 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2865221-2865770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2865221 -2865770 bp Feature: gene Location: 2866091-2866687 bp Feature: domain Description: slmA Location: 2866097-2866673 bp Feature: domain Description: slmA Location: 2866097-2866673 bp Feature: gene Location: 2866794-2867252 bp Feature: domain Description: dut Location: 2866800-2867247 bp Feature: domain Description: dut Location: 2866800-2867247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JMIZ01000006.1 Escherichia coli strain UCD_JA03_pb contig_6, whole genome shotgun sequence (1788799 bp)
Overview 1 RT 1: 1415498-1421201 bp Neighborhood of RT #1 [1415498, 1421212] YeeP PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 1415498-1416370 bp Feature: domain Description: YeeP Location: 1415501-1416368 bp Feature: domain Description: YeeP Location: 1415501-1416368 bp Feature: gene Location: 1416821-1417261 bp Feature: domain Description: PHA02517 Location: 1416824-1417232 bp Feature: domain Description: PHA02 517 Location: 141682 4-14172 32 bp Feature: gene Location: 1417390-1418913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417663-1418395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417663-1418395 bp Feature: domain Description: GIIM Note: maturase Location: 1418470-1418668 bp Feature: domain Description: GIIM Note: maturase Location: 1418470-1418668 bp Feature: gene Location: 1419505-1419768 bp Feature: domain Description: PHA02517 Location: 1419508-1419703 bp Feature: domain Description: PHA02 517 Location: 1419508-1419703 bp Feature: gene Location: 1420061-1421212 bp Feature: domain Description: HTH_38 Location: 1420070-1420184 bp Feature: domain Description: HTH_38 Location: 142 0070-142 0184 bp Feature: domain Description: Tra8 Location: 1420220-1421201 bp Feature: domain Description: Tra8 Location: 142 02 2 0-142 12 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826)