myRT

myRT report for GCA_000715605.1_ASM71560v1

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Seq: KL568523.1 Streptomyces speibonae strain NRRL B-24240 genomic scaffold P008_Doro1_scaffold5, whole genome shotgun sequence (140116 bp)
Overview 1 RT 1: 135972-140113 bp Neighborhood of RT #1 [135972, 140113] RVT-Retrons Feature: gene Location: 135972-136112 bp Feature: gene Location: 136178-137128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136298-136838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 36298-1 36838 bp Feature: gene Location: 138982-139917 bp Feature: gene Location: 139961-140113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: KL568590.1 Streptomyces speibonae strain NRRL B-24240 genomic scaffold P008_Doro1_scaffold72, whole genome shotgun sequence (38337 bp)
Overview 1 RT 1: 189-5320 bp Neighborhood of RT #1 [189, 5382] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cas6 S_4TM Feature: gene Location: 189-473 bp Feature: domain Description: Cas2_I_II_III Location: 207-438 bp Feature: domain Description: Cas2 _I_II_III Location: 2 07-438 bp Feature: gene Location: 481-2358 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 691-1297 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 691-12 97 bp Feature: domain Description: Cas1_I-II-III Location: 1363-2317 bp Feature: domain Description: Cas1_I-II-III Location: 1363-2 317 bp Feature: gene Location: 3670-4428 bp Feature: domain Description: Cas6 Location: 3997-4384 bp Feature: domain Description: Cas6 Location: 3997-4384 bp Feature: gene Location: 4441-5382 bp Feature: domain Description: S_4TM Location: 4477-5320 bp Feature: domain Description: S_4TM Location: 4477-532 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas6 (pfam09559), S_4TM (pfam18159)

Seq: JNXM01003532.1 Streptomyces speibonae strain NRRL B-24240 contig188.1, whole genome shotgun sequence (1814 bp)
Overview 1 RT 1: 2-1148 bp Neighborhood of RT #1 [2, 1159] RVT-GII GIIM Feature: gene Location: 2-1159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-890 bp Feature: domain Description: GIIM Note: maturase Location: 974-1148 bp Feature: domain Description: GIIM Note: maturase Location: 974-1148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)