myRT

myRT report for GCA_000716135.1_ASM71613v1

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Seq: KL574418.1 Nonomuraea kuesteri strain NRRL B-24325 genomic scaffold P170_Doro1_scaffold15, whole genome shotgun sequence (202976 bp)
Overview 1 RT 1: 154661-159254 bp Neighborhood of RT #1 [154661, 159254] HTH_Tnp_1 RVT-GII GIIM PHA02517 Feature: gene Location: 154661-154924 bp Feature: gene Location: 155229-155453 bp Feature: domain Description: HTH_Tnp_1 Location: 155241-155400 bp Feature: domain Description: HTH_Tnp_1 Location: 1 55241 -1 55400 bp Feature: gene Location: 156129-157643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156516-157212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5651 6-1 5721 2 bp Feature: domain Description: GIIM Note: maturase Location: 157281-157503 bp Feature: domain Description: GIIM Note: maturase Location: 1 57281 -1 57503 bp Feature: gene Location: 157656-158663 bp Feature: domain Description: PHA02517 Location: 157836-158649 bp Feature: domain Description: PHA0251 7 Location: 1 57836-1 58649 bp Feature: gene Location: 159009-159254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: KL574544.1 Nonomuraea kuesteri strain NRRL B-24325 genomic scaffold P170_Doro1_scaffold141, whole genome shotgun sequence (91792 bp)
Overview 1 RT 1: 51414-56303 bp Neighborhood of RT #1 [51414, 56303] EfeO tat_substr_1 RVT-GII GIIM Feature: gene Location: 51414-52550 bp Feature: domain Description: EfeO Location: 51498-52542 bp Feature: domain Description: EfeO Location: 51498-52 542 bp Feature: gene Location: 52619-53773 bp Feature: domain Description: tat_substr_1 Location: 52655-53771 bp Feature: domain Description: tat_substr_1 Location: 52 655-53771 bp Feature: gene Location: 53872-55026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53989-54649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53989-54649 bp Feature: domain Description: GIIM Note: maturase Location: 54730-54961 bp Feature: domain Description: GIIM Note: maturase Location: 54730-54961 bp Feature: gene Location: 55692-55877 bp Feature: gene Location: 55923-56303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EfeO (COG2822), tat_substr_1 (TIGR01412), RVT-GII, GIIM (pfam08388)

Seq: JOAM01006080.1 Nonomuraea kuesteri strain NRRL B-24325 contig290.1, whole genome shotgun sequence (2999 bp)
Overview 1 RT 1: 63-2954 bp Neighborhood of RT #1 [63, 2998] COG3464 CitB COG3464 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 63-482 bp Feature: domain Description: COG3464 Location: 99-480 bp Feature: domain Description: COG3 464 Location: 99-480 bp Feature: gene Location: 544-1278 bp Feature: domain Description: CitB Location: 562-664 bp Feature: domain Description: CitB Location: 562-664 bp Feature: domain Description: COG3464 Location: 943-1264 bp Feature: domain Description: COG3 464 Location: 943 -1264 bp Feature: gene Location: 1490-2998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493 -2273 bp Feature: domain Description: Intron_maturas2 Location: 2366-2624 bp Feature: domain Description: Intron_maturas2 Location: 23 66-2624 bp Feature: domain Description: HNHc Note: nucleases Location: 2792-2954 bp Feature: domain Description: HNHc Note: nucleases Location: 2792-2954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CitB (TIGR02484), COG3464 (Transposase )

Seq: JOAM01006603.1 Nonomuraea kuesteri strain NRRL B-24325 contig371.1, whole genome shotgun sequence (1212 bp)
Overview 1 RT 1: 1-1039 bp Neighborhood of RT #1 [1, 1125] RVT-GII GIIM Feature: gene Location: 1-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82-736 bp Feature: domain Description: GIIM Note: maturase Location: 817-1039 bp Feature: domain Description: GIIM Note: maturase Location: 817-1039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JOAM01006654.1 Nonomuraea kuesteri strain NRRL B-24325 contig393.1, whole genome shotgun sequence (776 bp)
Overview 1 RT 1: 3-771 bp Neighborhood of RT #1 [3, 773] RVT-GII Feature: gene Location: 3-773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JOAM01006660.1 Nonomuraea kuesteri strain NRRL B-24325 contig396.1, whole genome shotgun sequence (726 bp)
Overview 1 RT 1: 3-603 bp Neighborhood of RT #1 [3, 617] RVT-GII GIIM Feature: gene Location: 3-617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-312 bp Feature: domain Description: GIIM Note: maturase Location: 384-603 bp Feature: domain Description: GIIM Note: maturase Location: 384-6 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)