myRT

myRT report for GCA_000719175.1_ASM71917v1

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Seq: JOER01000039.1 Kitasatospora aureofaciens strain NRRL B-2657 contig39.1, whole genome shotgun sequence (127450 bp)
Overview 1 RT 1: 32586-40832 bp Neighborhood of RT #1 [32586, 40873] M48_Ste24p_like RVT-GII Intron_maturas2 HNHc carb_red_PTCR-like_SDR_c HTH_31 MLTR_LBD Feature: gene Location: 32586-33110 bp Feature: gene Location: 34691-36040 bp Feature: domain Description: M48_Ste24p_like Location: 35078-35927 bp Feature: domain Description: M48_Ste24p_like Location: 35078-35927 bp Feature: gene Location: 36565-38367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36826-37624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36826-37624 bp Feature: domain Description: Intron_maturas2 Location: 37759-37996 bp Feature: domain Description: Intron_maturas2 Location: 37759-37996 bp Feature: domain Description: HNHc Note: nucleases Location: 38161-38323 bp Feature: domain Description: HNHc Note: nucleases Location: 381 61 -38323 bp Feature: gene Location: 39191-41086 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 40397-41081 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 40397-41 081 bp Feature: gene Location: 40004-40873 bp Feature: domain Description: HTH_31 Location: 40034-40268 bp Feature: domain Description: HTH_31 Location: 40034-40268 bp Feature: domain Description: MLTR_LBD Location: 40325-40832 bp Feature: domain Description: MLTR_LBD Location: 40325-40832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M48_Ste24p_like (cd07328), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), carb_red_PTCR-like_SDR_c (cd05324), HTH_31 (pfam13560), MLTR_LBD (pfam17765)

Seq: JOER01000046.1 Kitasatospora aureofaciens strain NRRL B-2657 contig46.1, whole genome shotgun sequence (105079 bp)
Overview 1 RT 1: 29734-35310 bp Neighborhood of RT #1 [29734, 35310] TMR_SDR_a RVT_N RVT-GII GIIM Tra8 Tra8 Feature: gene Location: 29734-30594 bp Feature: domain Description: TMR_SDR_a Location: 29740-30562 bp Feature: domain Description: TMR_SDR_a Location: 2 9740-30562 bp Feature: gene Location: 30904-31419 bp Feature: gene Location: 31848-33659 bp Feature: RT Description: RVT_N Location: 31941-32178 bp Feature: RT Description: RVT_N Location: 31941-32 178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32238-32898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 38-32 898 bp Feature: domain Description: GIIM Note: maturase Location: 32952-33183 bp Feature: domain Description: GIIM Note: maturase Location: 32 952 -33183 bp Feature: gene Location: 34277-34921 bp Feature: domain Description: Tra8 Location: 34283-34481 bp Feature: domain Description: Tra8 Location: 342 83-34481 bp Feature: domain Description: Tra8 Location: 34580-34874 bp Feature: domain Description: Tra8 Location: 34580-34874 bp Feature: gene Location: 34939-35310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMR_SDR_a (cd05269), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)

Seq: JOER01000061.1 Kitasatospora aureofaciens strain NRRL B-2657 contig61.1, whole genome shotgun sequence (50418 bp)
Overview 1 RT 1: 10806-20973 bp Neighborhood of RT #1 [10806, 21071] HTH_1 PBP2_LTTR_like_6 RVT-GII COG5659 RVT-GII GIIM HEAT_2 HEAT_2 Feature: gene Location: 10806-11693 bp Feature: domain Description: HTH_1 Location: 10818-10992 bp Feature: domain Description: HTH_1 Location: 10818-10992 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 11088-11670 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 11088-11670 bp Feature: gene Location: 11904-12374 bp Feature: gene Location: 12526-13344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12727-13168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12727-13 168 bp Feature: gene Location: 13652-13915 bp Feature: gene Location: 14573-14944 bp Feature: domain Description: COG5659 Location: 14606-14813 bp Feature: domain Description: COG5659 Location: 14606-14813 bp Feature: gene Location: 16218-16664 bp Feature: gene Location: 16698-17702 bp Feature: gene Location: 19161-19970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19164-19623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19164-19623 bp Feature: domain Description: GIIM Note: maturase Location: 19701-19857 bp Feature: domain Description: GIIM Note: maturase Location: 19701-19857 bp Feature: gene Location: 19711-20277 bp Feature: gene Location: 20358-21071 bp Feature: domain Description: HEAT_2 Location: 20472-20730 bp Feature: domain Description: HEAT_2 Location: 20472-2073 0 bp Feature: domain Description: HEAT_2 Location: 20874-20973 bp Feature: domain Description: HEAT_2 Location: 20874-20973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_LTTR_like_6 (cd08423), RVT-GII, COG5659 (SRSO17 transposase ), GIIM (pfam08388), HEAT_2 (pfam13646)

Seq: JOER01000092.1 Kitasatospora aureofaciens strain NRRL B-2657 contig92.1, whole genome shotgun sequence (18695 bp)
Overview 1 RT 1: 79-6977 bp Neighborhood of RT #1 [79, 6988] HTH_ARSR nicotinamidase_related RVT_N RVT-GII GIIM HNH GlxA BaeS Feature: gene Location: 79-1098 bp Feature: domain Description: HTH_ARSR Location: 859-1048 bp Feature: domain Description: HTH_ARSR Location: 859-104 8 bp Feature: gene Location: 1219-1698 bp Feature: domain Description: nicotinamidase_related Location: 1234-1633 bp Feature: domain Description: nicotinamidase_related Location: 1234 -1633 bp Feature: gene Location: 1811-3568 bp Feature: RT Description: RVT_N Location: 1877-2123 bp Feature: RT Description: RVT_N Location: 1877-2123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2822 bp Feature: domain Description: GIIM Note: maturase Location: 2873-3107 bp Feature: domain Description: GIIM Note: maturase Location: 2873-3107 bp Feature: domain Description: HNH Note: nucleases Location: 3437-3536 bp Feature: domain Description: HNH Note: nucleases Location: 34 37-3536 bp Feature: gene Location: 4463-5464 bp Feature: domain Description: GlxA Location: 4472-5441 bp Feature: domain Description: GlxA Location: 4 4 72-54 4 1 bp Feature: gene Location: 5519-6988 bp Feature: domain Description: BaeS Location: 6017-6977 bp Feature: domain Description: BaeS Location: 6017-6977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nicotinamidase_related (cd01014), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), GlxA (COG4977), BaeS (COG0642), HTH_ARSR (smart00418)