myRT

myRT report for GCA_000720375.1_ASM72037v1

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Seq: JOAA01000002.1 Rhodococcus rhodnii strain NRRL B-16535 contig2.1, whole genome shotgun sequence (563222 bp)
Overview 1 RT 1: 26711-34345 bp Neighborhood of RT #1 [26711, 34374] dnaE2 TIGR03086 RVT-Retrons Usp TNT Feature: gene Location: 26711-29971 bp Feature: domain Description: dnaE2 Location: 26846-29969 bp Feature: domain Description: dnaE2 Location: 26846-29969 bp Feature: gene Location: 29973-30566 bp Feature: domain Description: TIGR03086 Location: 30111-30558 bp Feature: domain Description: TIGR03086 Location: 301 1 1 -30558 bp Feature: gene Location: 30578-31981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31139-31757 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 1 39-31 757 bp Feature: gene Location: 32041-32451 bp Feature: domain Description: Usp Location: 32050-32449 bp Feature: domain Description: Usp Location: 32050-32449 bp Feature: gene Location: 32515-34374 bp Feature: domain Description: TNT Location: 34087-34345 bp Feature: domain Description: TNT Location: 34087-34345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaE2 (PRK05672), TIGR03086 (TIGR03086 family protein), RVT-Retrons, Usp (pfam00582), TNT (pfam14021)

Seq: JOAA01000025.1 Rhodococcus rhodnii strain NRRL B-16535 contig25.1, whole genome shotgun sequence (148942 bp)
Overview 1 RT 1: 13561-19190 bp Neighborhood of RT #1 [13561, 19228] RVT-GII RVT-GII PurR ManA ManA ManA Feature: gene Location: 13561-14052 bp Feature: gene Location: 14160-14324 bp Feature: gene Location: 15203-15535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15215-15512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 15-15512 bp Feature: gene Location: 15484-15990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15700-15943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15700-15943 bp Feature: gene Location: 17214-18197 bp Feature: domain Description: PurR Location: 17217-18183 bp Feature: domain Description: PurR Location: 172 17-18183 bp Feature: gene Location: 18194-19228 bp Feature: domain Description: ManA Location: 18398-18614 bp Feature: domain Description: ManA Location: 18398-18614 bp Feature: domain Description: ManA Location: 18692-18827 bp Feature: domain Description: ManA Location: 18692 -1882 7 bp Feature: domain Description: ManA Location: 19055-19190 bp Feature: domain Description: ManA Location: 19055-19190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PurR (COG1609), ManA (COG1482)

Seq: JOAA01000037.1 Rhodococcus rhodnii strain NRRL B-16535 contig37.1, whole genome shotgun sequence (95375 bp)
Overview 1 RT 1: 90364-93815 bp Neighborhood of RT #1 [90364, 93815] Phenol_Hydrox GATase1_Hsp31_like RVT-GII Feature: gene Location: 90364-90900 bp Feature: domain Description: Phenol_Hydrox Location: 90418-90787 bp Feature: domain Description: Phenol_Hydrox Location: 90418-90787 bp Feature: gene Location: 90900-91589 bp Feature: domain Description: GATase1_Hsp31_like Location: 90918-91569 bp Feature: domain Description: GATase1_Hsp3 1_like Location: 90918-91569 bp Feature: gene Location: 91884-92102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91911-92088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91911-92088 bp Feature: gene Location: 92118-92354 bp Feature: gene Location: 92766-93815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phenol_Hydrox (pfam02332), GATase1_Hsp31_like (cd03141), RVT-GII

Seq: JOAA01000087.1 Rhodococcus rhodnii strain NRRL B-16535 contig87.1, whole genome shotgun sequence (4022 bp)
Overview 1 RT 1: 3-4019 bp Neighborhood of RT #1 [3, 4019] RVT-GII RVT_N RVT-GII GIIM RVT-GII Feature: gene Location: 3-572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-4 20 bp Feature: gene Location: 669-2444 bp Feature: RT Description: RVT_N Location: 750-987 bp Feature: RT Description: RVT_N Location: 750-987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 7-1707 bp Feature: domain Description: GIIM Note: maturase Location: 1761-1995 bp Feature: domain Description: GIIM Note: maturase Location: 1761-1995 bp Feature: gene Location: 3033-3737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294-3669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294 -3669 bp Feature: gene Location: 3759-4019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655), GIIM (pfam08388)

Seq: JOAA01000093.1 Rhodococcus rhodnii strain NRRL B-16535 contig93.1, whole genome shotgun sequence (2145 bp)
Overview 1 RT 1: 234-1907 bp Neighborhood of RT #1 [234, 2017] RVT-GII GIIM Feature: gene Location: 234-560 bp Feature: gene Location: 596-2017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920-1604 bp Feature: domain Description: GIIM Note: maturase Location: 1682-1907 bp Feature: domain Description: GIIM Note: maturase Location: 1682-1907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JOAA01000097.1 Rhodococcus rhodnii strain NRRL B-16535 contig97.1, whole genome shotgun sequence (1949 bp)
Overview 1 RT 1: 78-1257 bp Neighborhood of RT #1 [78, 1343] RVT-GII GIIM Feature: gene Location: 78-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-957 bp Feature: domain Description: GIIM Note: maturase Location: 1035-1257 bp Feature: domain Description: GIIM Note: maturase Location: 1035-1257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)