myRT

myRT report for GCA_000721705.1_ASM72170v1

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Seq: JOJL01000020.1 Actinoplanes subtropicus strain NRRL B-24665 contig20.1, whole genome shotgun sequence (431646 bp)
Overview 1 RT 1: 70331-75212 bp Neighborhood of RT #1 [70331, 75229] Cupin_6 HTH_ARAC PRK08264 RVT-GII Intron_maturas2 HNHc GntR Feature: gene Location: 70331-71233 bp Feature: domain Description: Cupin_6 Location: 70337-70874 bp Feature: domain Description: Cupin_6 Location: 70337-70874 bp Feature: domain Description: HTH_ARAC Location: 70973-71222 bp Feature: domain Description: HTH_ARAC Location: 70973-71 222 bp Feature: gene Location: 71339-72082 bp Feature: domain Description: PRK08264 Location: 71342-72065 bp Feature: domain Description: PRK08264 Location: 71 342-72065 bp Feature: gene Location: 72827-73330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72830-73328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72830-73328 bp Feature: gene Location: 73381-74124 bp Feature: domain Description: Intron_maturas2 Location: 73516-73747 bp Feature: domain Description: Intron_maturas2 Location: 7351 6-73747 bp Feature: domain Description: HNHc Note: nucleases Location: 73912-74083 bp Feature: domain Description: HNHc Note: nucleases Location: 7391 2-74083 bp Feature: gene Location: 74573-75229 bp Feature: domain Description: GntR Location: 74588-75212 bp Feature: domain Description: GntR Location: 74588-7521 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), HTH_ARAC (smart00342), PRK08264 (SDR family oxidoreductase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GntR (pfam00392)

Seq: JOJL01000057.1 Actinoplanes subtropicus strain NRRL B-24665 contig57.1, whole genome shotgun sequence (39543 bp)
Overview 1 RT 1: 4380-15091 bp Neighborhood of RT #1 [4380, 15096] UbiH F5_F8_type_C Glyco_hydro_92N Glyco_hydro_92 PKD PKD RVT-Retrons RpoE Feature: gene Location: 4380-5483 bp Feature: domain Description: UbiH Location: 4386-5412 bp Feature: domain Description: UbiH Location: 4386-5412 bp Feature: gene Location: 5595-10955 bp Feature: domain Description: F5_F8_type_C Location: 5850-6198 bp Feature: domain Description: F5_F8_type_C Location: 5850-6198 bp Feature: domain Description: Glyco_hydro_92N Location: 6789-7374 bp Feature: domain Description: Glyco_hydro_92 N Location: 6789-7374 bp Feature: domain Description: Glyco_hydro_92 Location: 7443-8949 bp Feature: domain Description: Glyco_hydro_92 Location: 7443-8949 bp Feature: domain Description: PKD Location: 9486-9723 bp Feature: domain Description: PKD Location: 9486-972 3 bp Feature: domain Description: PKD Location: 10431-10617 bp Feature: domain Description: PKD Location: 10431-10617 bp Feature: gene Location: 11290-12492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11659-12259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11659-12 2 59 bp Feature: gene Location: 12683-14473 bp Feature: gene Location: 14035-15096 bp Feature: domain Description: RpoE Location: 14584-15091 bp Feature: domain Description: RpoE Location: 14584-15091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RpoE (COG3343), UbiH (TIGR01984), F5_F8_type_C (pfam00754), Glyco_hydro_92N (pfam17678), Glyco_hydro_92 (pfam07971), PKD (smart00089)

Seq: JOJL01000063.1 Actinoplanes subtropicus strain NRRL B-24665 contig63.1, whole genome shotgun sequence (25589 bp)
Overview 1 RT 1: 694-4006 bp Neighborhood of RT #1 [694, 4006] RVT_N RVT-GII GIIM HTH_32 rve_3 Feature: gene Location: 694-2451 bp Feature: RT Description: RVT_N Location: 769-1006 bp Feature: RT Description: RVT_N Location: 769-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1720 bp Feature: domain Description: GIIM Note: maturase Location: 1771-2005 bp Feature: domain Description: GIIM Note: maturase Location: 1771-2005 bp Feature: gene Location: 2643-3740 bp Feature: domain Description: HTH_32 Location: 2892-3102 bp Feature: domain Description: HTH_3 2 Location: 2892-3 102 bp Feature: domain Description: rve_3 Location: 3435-3627 bp Feature: domain Description: rve_3 Location: 3 43 5-3 627 bp Feature: gene Location: 3803-4006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve_3 (pfam13683), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JOJL01000103.1 Actinoplanes subtropicus strain NRRL B-24665 contig103.1, whole genome shotgun sequence (2543 bp)
Overview 1 RT 1: 77-1406 bp Neighborhood of RT #1 [77, 1879] RVT_N RVT-GII GIIM Feature: gene Location: 77-1879 bp Feature: RT Description: RVT_N Location: 167-407 bp Feature: RT Description: RVT_N Location: 167-4 07 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 64 -1121 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1406 bp Feature: domain Description: GIIM Note: maturase Location: 1172-14 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JOJL01000104.1 Actinoplanes subtropicus strain NRRL B-24665 contig104.1, whole genome shotgun sequence (2537 bp)
Overview 1 RT 1: 681-1992 bp Neighborhood of RT #1 [681, 2435] RVT_N RVT-GII GIIM Feature: gene Location: 681-2435 bp Feature: RT Description: RVT_N Location: 756-996 bp Feature: RT Description: RVT_N Location: 75 6-996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105 3-1707 bp Feature: domain Description: GIIM Note: maturase Location: 1761-1992 bp Feature: domain Description: GIIM Note: maturase Location: 1761-1992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JOJL01000110.1 Actinoplanes subtropicus strain NRRL B-24665 contig110.1, whole genome shotgun sequence (1932 bp)
Overview 1 RT 1: 585-1764 bp Neighborhood of RT #1 [585, 1865] RVT-GII GIIM Feature: gene Location: 585-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804-146 1 bp Feature: domain Description: GIIM Note: maturase Location: 1539-1764 bp Feature: domain Description: GIIM Note: maturase Location: 1539-176 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)