myRT

myRT report for GCA_000722635.1_ASM72263v1

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Seq: JOKH01000005.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00005, whole genome shotgun sequence (465244 bp)
Overview 1 RT 1: 146417-154105 bp Neighborhood of RT #1 [146417, 154125] MviM KOG3923 KOG3923 RVT-GII GIIM ProV ProW Feature: gene Location: 146417-147367 bp Ori: KEQ16424.1 Feature: domain Description: MviM Location: 146432-147344 bp Feature: domain Description: MviM Location: 1 46432-1 47344 bp Feature: gene Location: 148755-149948 bp Ori: KEQ16425.1 Feature: domain Description: KOG3923 Location: 148896-149067 bp Feature: domain Description: KOG3923 Location: 1 48896-1 49067 bp Feature: domain Description: KOG3923 Location: 149085-149712 bp Feature: domain Description: KOG3923 Location: 1 49085-1 4971 2 bp Feature: gene Location: 150499-151824 bp Ori: KEQ16426.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150793-151411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50793-1 51 41 1 bp Feature: domain Description: GIIM Note: maturase Location: 151456-151681 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 456-1 51 681 bp Feature: gene Location: 152043-153236 bp Ori: KEQ16427.1 Feature: domain Description: ProV Location: 152049-153216 bp Feature: domain Description: ProV Location: 1 52049-1 5321 6 bp Feature: gene Location: 153229-154125 bp Ori: KEQ16428.1 Feature: domain Description: ProW Location: 153262-154105 bp Feature: domain Description: ProW Location: 1 53262-1 541 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), KOG3923 (KOG3923, D-aspartate oxidase ), RVT-GII, GIIM (pfam08388), ProV (COG4175), ProW (COG4176)

Seq: JOKH01000001.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00001, whole genome shotgun sequence (1695894 bp)
Overview 1 RT 1: 295134-300165 bp 2 RT 2: 997802-1000783 bp 3 RT 3: 1213956-1221551 bp 4 RT 4: 1497668-1498850 bp Neighborhood of RT #1 [295134, 300173] TA_like RVT-GII GIIM TrxB Neighborhood of RT #2 [997802, 1000926] PRK12483 RVT-GII GIIM Neighborhood of RT #3 [1213956, 1221565] arylsulfatase_Sdsa1-like_MBL-fold Y1_Tnp RVT-GII GIIM DUF1302 DUF1329 Neighborhood of RT #4 [1497668, 1498993] RVT-GII GIIM Feature: gene Location: 295134-295724 bp Feature: gene Location: 295880-296896 bp Ori: KEQ18770.1 Feature: domain Description: TA_like Location: 295892-296882 bp Feature: domain Description: TA_like Location: 2 95892 -2 96882 bp Feature: gene Location: 296991-298217 bp Ori: KEQ18771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297186-297804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 97186-2 97804 bp Feature: domain Description: GIIM Note: maturase Location: 297849-298074 bp Feature: domain Description: GIIM Note: maturase Location: 2 97849-2 98074 bp Feature: gene Location: 298807-299163 bp Feature: gene Location: 299214-300173 bp Ori: KEQ18773.1 Feature: domain Description: TrxB Location: 299298-300165 bp Feature: domain Description: TrxB Location: 2 992 98-300165 bp Feature: gene Location: 997802-999316 bp Ori: KEQ19323.1 Feature: domain Description: PRK12483 Location: 997811-999314 bp Feature: domain Description: PRK12 483 Location: 997811-999314 bp Feature: gene Location: 999397-999723 bp Feature: gene Location: 999700-1000926 bp Ori: KEQ19325.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 999895-1000513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 999895-1000513 bp Feature: domain Description: GIIM Note: maturase Location: 1000558-1000783 bp Feature: domain Description: GIIM Note: maturase Location: 1000558-1000783 bp Feature: gene Location: 1213956-1214399 bp Ori: KEQ19463.1 Feature: domain Description: arylsulfatase_Sdsa1-like_MBL-fold Location: 1214163-1214337 bp Feature: domain Description: arylsulfatase_Sdsa1-like_MBL-fold Location: 12 14163-12 14337 bp Feature: gene Location: 1214461-1214895 bp Ori: KEQ19464.1 Feature: domain Description: Y1_Tnp Location: 1214497-1214851 bp Feature: domain Description: Y1_Tnp Location: 12 14497-12 14851 bp Feature: gene Location: 1215216-1216541 bp Ori: KEQ19465.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1215510-1216128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 15510-12 1612 8 bp Feature: domain Description: GIIM Note: maturase Location: 1216173-1216398 bp Feature: domain Description: GIIM Note: maturase Location: 12 16173-12 16398 bp Feature: gene Location: 1218158-1220047 bp Ori: KEQ19466.1 Feature: domain Description: DUF1302 Location: 1218278-1220045 bp Feature: domain Description: DUF1302 Location: 12 182 78-12 2 0045 bp Feature: gene Location: 1220207-1221565 bp Ori: KEQ19467.1 Feature: domain Description: DUF1329 Location: 1220462-1221551 bp Feature: domain Description: DUF132 9 Location: 12 2 0462 -12 2 1551 bp Feature: gene Location: 1497668-1498993 bp Ori: KEQ19664.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1497962-1498580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1497962 -1498580 bp Feature: domain Description: GIIM Note: maturase Location: 1498625-1498850 bp Feature: domain Description: GIIM Note: maturase Location: 149862 5-1498850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TA_like (cd06502), RVT-GII, GIIM (pfam08388), TrxB (COG0492), PRK12483 (threonine dehydratase; Reviewed), arylsulfatase_Sdsa1-like_MBL-fold (cd07710), Y1_Tnp (pfam01797), DUF1302 (pfam06980), DUF1329 (pfam07044)

Seq: JOKH01000013.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00013, whole genome shotgun sequence (41412 bp)
Overview 1 RT 1: 9281-17340 bp Neighborhood of RT #1 [9281, 17340] PAS GGDEF EAL RVT-GII TilS Feature: gene Location: 9281-11296 bp Ori: KEQ11749.1 Feature: domain Description: PAS Location: 9665-9965 bp Feature: domain Description: PAS Location: 9665-9965 bp Feature: domain Description: GGDEF Location: 10127-10508 bp Feature: domain Description: GGDEF Location: 10127-10508 bp Feature: domain Description: EAL Location: 10568-11273 bp Feature: domain Description: EAL Location: 10568-11273 bp Feature: gene Location: 11293-11631 bp Feature: gene Location: 12006-13490 bp Ori: KEQ11751.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12432-13122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1243 2-13 122 bp Feature: gene Location: 15276-16556 bp Ori: KEQ11752.1 Feature: domain Description: TilS Location: 15687-16419 bp Feature: domain Description: TilS Location: 15687-16419 bp Feature: gene Location: 17089-17340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS (smart00091), GGDEF (TIGR00254), EAL (smart00052), RVT-GII, TilS (pfam09179)

Seq: JOKH01000002.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00002, whole genome shotgun sequence (1279779 bp)
Overview 1 RT 1: 123407-129065 bp 2 RT 2: 419926-424098 bp 3 RT 3: 452038-454935 bp 4 RT 4: 1066625-1077663 bp Neighborhood of RT #1 [123407, 129079] LapA_dom hip RVT-GII GIIM rpsA cmk Neighborhood of RT #2 [419926, 424098] COG3464 RAYT RVT-GII GIIM Lipase_3 Neighborhood of RT #3 [452038, 455078] Peptidase_C39_likeA RVT-GII GIIM Neighborhood of RT #4 [1066625, 1077663] PccA PRK06116 RVT-UG5 COG2865 Feature: gene Location: 123407-123727 bp Ori: KEQ17753.1 Feature: domain Description: LapA_dom Location: 123503-123689 bp Feature: domain Description: LapA_dom Location: 123503-123689 bp Feature: gene Location: 123941-124234 bp Ori: KEQ17754.1 Feature: domain Description: hip Location: 123944-124217 bp Feature: domain Description: hip Location: 12394 4 -124 217 bp Feature: gene Location: 124587-125813 bp Ori: KEQ17755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124782-125400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 782-1254 00 bp Feature: domain Description: GIIM Note: maturase Location: 125445-125670 bp Feature: domain Description: GIIM Note: maturase Location: 1254 4 5-125670 bp Feature: gene Location: 126353-128032 bp Ori: KEQ17756.1 Gene: rpsA Feature: domain Description: rpsA Location: 126356-128027 bp Feature: domain Description: rpsA Location: 126356-128027 bp Feature: gene Location: 128390-129079 bp Ori: KEQ17757.1 Feature: domain Description: cmk Location: 128405-129065 bp Feature: domain Description: cmk Location: 1284 05-129065 bp Feature: gene Location: 419926-420360 bp Ori: KEQ17952.1 Feature: domain Description: COG3464 Location: 419986-420343 bp Feature: domain Description: COG34 64 Location: 4 19986-4 2034 3 bp Feature: gene Location: 420420-420929 bp Ori: KEQ17953.1 Feature: domain Description: RAYT Location: 420447-420894 bp Feature: domain Description: RAYT Location: 4 204 4 7-4 20894 bp Feature: gene Location: 421038-422264 bp Ori: KEQ17954.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421233-421851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 21233-4 21851 bp Feature: domain Description: GIIM Note: maturase Location: 421896-422121 bp Feature: domain Description: GIIM Note: maturase Location: 4 21896-4 22121 bp Feature: gene Location: 422760-423401 bp Ori: KEQ17955.1 Feature: domain Description: Lipase_3 Location: 423006-423144 bp Feature: domain Description: Lipase_3 Location: 4 23006-4 2314 4 bp Feature: gene Location: 423442-424098 bp Feature: gene Location: 452038-452802 bp Feature: gene Location: 453143-453535 bp Ori: KEQ17980.1 Feature: domain Description: Peptidase_C39_likeA Location: 453161-453377 bp Feature: domain Description: Peptidase_C39_likeA Location: 4 53161-4 53377 bp Feature: gene Location: 453852-455078 bp Ori: KEQ17981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454047-454665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 54 04 7-4 54 665 bp Feature: domain Description: GIIM Note: maturase Location: 454710-454935 bp Feature: domain Description: GIIM Note: maturase Location: 4 54 710-4 54 935 bp Feature: gene Location: 1066625-1068607 bp Ori: KEQ18423.1 Feature: domain Description: PccA Location: 1066637-1068584 bp Feature: domain Description: PccA Location: 1066637-1068584 bp Feature: gene Location: 1070495-1071862 bp Ori: KEQ18424.1 Feature: domain Description: PRK06116 Location: 1070510-1071860 bp Feature: domain Description: PRK06116 Location: 1070510-1071860 bp Feature: gene Location: 1071930-1074962 bp Ori: KEQ18425.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1072482-1072968 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10724 82-1072968 bp Feature: gene Location: 1075294-1077234 bp Ori: KEQ18426.1 Feature: domain Description: COG2865 Location: 1075324-1076740 bp Feature: domain Description: COG2865 Location: 1075324 -107674 0 bp Feature: gene Location: 1077373-1077663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LapA_dom (pfam06305), hip (TIGR00988), RVT-GII, GIIM (pfam08388), rpsA (TIGR00717), cmk (TIGR00017), COG3464 (Transposase ), RAYT (COG1943), Lipase_3 (pfam01764), Peptidase_C39_likeA (cd02417)
PccA (COG4770), PRK06116 (glutathione reductase; Validated), RVT-UG5, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: JOKH01000003.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00003, whole genome shotgun sequence (917146 bp)
Overview 1 RT 1: 129790-133256 bp 2 RT 2: 264323-271764 bp Neighborhood of RT #1 [129790, 133285] COG5421 RVT-GII Neighborhood of RT #2 [264323, 271802] RVT-GII Autotransporter KOG0157 CypX Feature: gene Location: 129790-131424 bp Ori: KEQ17100.1 Feature: domain Description: COG5421 Location: 129817-131326 bp Feature: domain Description: COG5 421 Location: 129817-131326 bp Feature: gene Location: 132953-133285 bp Ori: KEQ17101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132959-133256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13295 9-13325 6 bp Feature: gene Location: 264323-265807 bp Ori: KEQ17206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264749-265439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264749-265 439 bp Feature: gene Location: 267376-270009 bp Ori: KEQ17207.1 Feature: domain Description: Autotransporter Location: 269179-269944 bp Feature: domain Description: Autotransporter Location: 269179-269944 bp Feature: gene Location: 270168-271802 bp Ori: KEQ17208.1 Feature: domain Description: KOG0157 Location: 270708-270876 bp Feature: domain Description: KOG015 7 Location: 270708-270876 bp Feature: domain Description: CypX Location: 271182-271764 bp Feature: domain Description: CypX Location: 271182-271764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII, Autotransporter (smart00869), KOG0157 (KOG0157, Cytochrome P450 CYP4/CYP19/CYP26 subfamilies ), CypX (COG2124)

Seq: JOKH01000009.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00009, whole genome shotgun sequence (199894 bp)
Overview 1 RT 1: 4231-10546 bp Neighborhood of RT #1 [4231, 10584] PRK08133 PRK09482 RVT-GII GIIM PRK09246 CvpA Feature: gene Location: 4231-5415 bp Ori: KEQ13066.1 Feature: domain Description: PRK08133 Location: 4246-5407 bp Feature: domain Description: PRK08133 Location: 4246 -5407 bp Feature: gene Location: 5743-6507 bp Ori: KEQ13067.1 Feature: domain Description: PRK09482 Location: 5749-6499 bp Feature: domain Description: PRK09482 Location: 5749-6 499 bp Feature: gene Location: 6578-7804 bp Ori: KEQ13068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6773-7391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 773-7391 bp Feature: domain Description: GIIM Note: maturase Location: 7436-7661 bp Feature: domain Description: GIIM Note: maturase Location: 7436 -76 6 1 bp Feature: gene Location: 8397-9908 bp Ori: KEQ13069.1 Feature: domain Description: PRK09246 Location: 8400-9885 bp Feature: domain Description: PRK09246 Location: 8400-9885 bp Feature: gene Location: 10087-10584 bp Ori: KEQ13070.1 Feature: domain Description: CvpA Location: 10096-10546 bp Feature: domain Description: CvpA Location: 10096 -10546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08133 (O-succinylhomoserine sulfhydrylase; Validated), PRK09482 (flap endonuclease-like protein; Provisional), RVT-GII, GIIM (pfam08388), PRK09246 (amidophosphoribosyltransferase; Provisional), CvpA (COG1286)

Seq: JOKH01000006.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00006, whole genome shotgun sequence (323435 bp)
Overview 1 RT 1: 51184-57627 bp Neighborhood of RT #1 [51184, 57627] MATH_TRAF3 RAYT RVT-GII Feature: gene Location: 51184-53301 bp Ori: KEQ16149.1 Feature: domain Description: MATH_TRAF3 Location: 52789-53275 bp Feature: domain Description: MATH_TRAF3 Location: 527 89-5327 5 bp Feature: gene Location: 53723-54706 bp Ori: KEQ16150.1 Feature: domain Description: RAYT Location: 53771-54326 bp Feature: domain Description: RAYT Location: 537 7 1-54326 bp Feature: gene Location: 55564-56622 bp Ori: KEQ16151.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55756-56374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557 56-5637 4 bp Feature: gene Location: 56724-56912 bp Feature: gene Location: 57022-57627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATH_TRAF3 (cd03777), RAYT (COG1943), RVT-GII

Seq: JOKH01000004.1 Endozoicomonas numazuensis strain DSM 25634 scaffold00004, whole genome shotgun sequence (509067 bp)
Overview 1 RT 1: 244358-248190 bp Neighborhood of RT #1 [244358, 248204] RVT-GII GIIM lnt RhtB Feature: gene Location: 244358-245716 bp Ori: KEQ16843.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244640-245327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244640-245327 bp Feature: domain Description: GIIM Note: maturase Location: 245408-245630 bp Feature: domain Description: GIIM Note: maturase Location: 245408 -245630 bp Feature: gene Location: 246392-247954 bp Ori: KEQ16844.1 Feature: domain Description: lnt Location: 246419-247910 bp Feature: domain Description: lnt Location: 246419-247910 bp Feature: gene Location: 247983-248204 bp Ori: KEQ16845.1 Feature: domain Description: RhtB Location: 248013-248190 bp Feature: domain Description: RhtB Location: 248 013-248 190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), lnt (TIGR00546), RhtB (COG1280)