myRT

myRT report for GCA_000722695.1_ASM72269v1

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Seq: JPFU01000013.1 Streptococcus mitis strain SK629 gsmSK629.contig.12_1, whole genome shotgun sequence (853758 bp)
Overview 1 RT 1: 259471-266414 bp 2 RT 2: 331481-335702 bp Neighborhood of RT #1 [259471, 266419] SrmB PRK12736 RVT-GII GIIM AI-2E_transport DacC Neighborhood of RT #2 [331481, 335710] DUF3270 GIIM RVT-GII BaeS OmpR Feature: gene Location: 259471-260553 bp Feature: domain Description: SrmB Location: 259483-260503 bp Feature: domain Description: SrmB Location: 259483-260503 bp Feature: gene Location: 260705-261901 bp Feature: domain Description: PRK12736 Location: 260708-261896 bp Feature: domain Description: PRK1 2736 Location: 260708-261 896 bp Feature: gene Location: 262143-263420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262347-262962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262347-262962 bp Feature: domain Description: GIIM Note: maturase Location: 263016-263229 bp Feature: domain Description: GIIM Note: maturase Location: 26301 6-263229 bp Feature: gene Location: 263966-265075 bp Feature: domain Description: AI-2E_transport Location: 264023-265013 bp Feature: domain Description: AI-2E_transport Location: 264023-26501 3 bp Feature: gene Location: 265178-266419 bp Feature: domain Description: DacC Location: 265190-266414 bp Feature: domain Description: DacC Location: 2651 90-26641 4 bp Feature: gene Location: 331481-331768 bp Feature: domain Description: DUF3270 Location: 331487-331748 bp Feature: domain Description: DUF3270 Location: 331 487-331 748 bp Feature: gene Location: 331835-332221 bp Feature: domain Description: GIIM Note: maturase Location: 331838-332030 bp Feature: domain Description: GIIM Note: maturase Location: 331 838-332030 bp Feature: gene Location: 332285-333112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332489-333104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332489-3331 04 bp Feature: gene Location: 333655-335046 bp Feature: domain Description: BaeS Location: 334042-334966 bp Feature: domain Description: BaeS Location: 334042-334966 bp Feature: gene Location: 335036-335710 bp Feature: domain Description: OmpR Location: 335045-335702 bp Feature: domain Description: OmpR Location: 335045-335702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SrmB (COG0513), PRK12736 (elongation factor Tu; Reviewed), RVT-GII, GIIM (pfam08388), AI-2E_transport (pfam01594), DacC (COG1686), DUF3270 (pfam11674), BaeS (COG0642), OmpR (COG0745)

Seq: JPFU01000010.1 Streptococcus mitis strain SK629 gsmSK629.contig.9_1, whole genome shotgun sequence (27432 bp)
Overview 1 RT 1: 57-3444 bp Neighborhood of RT #1 [57, 3455] RVT-GII GIIM QueA GlcN6P_deaminase Feature: gene Location: 57-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261-876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 61-876 bp Feature: domain Description: GIIM Note: maturase Location: 930-1143 bp Feature: domain Description: GIIM Note: maturase Location: 930-1143 bp Feature: gene Location: 1569-2597 bp Feature: domain Description: QueA Location: 1572-2595 bp Feature: domain Description: QueA Location: 1572 -2 595 bp Feature: gene Location: 2748-3455 bp Feature: domain Description: GlcN6P_deaminase Location: 2787-3444 bp Feature: domain Description: GlcN6P_deaminase Location: 2 787-3444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueA (COG0809), GlcN6P_deaminase (cd01399), RVT-GII, GIIM (pfam08388)

Seq: JPFU01000004.1 Streptococcus mitis strain SK629 gsmSK629.contig.3_1, whole genome shotgun sequence (117932 bp)
Overview 1 RT 1: 1029-3184 bp Neighborhood of RT #1 [1029, 3184] RVT-GII GIIM Feature: gene Location: 1029-2306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 3 -1848 bp Feature: domain Description: GIIM Note: maturase Location: 1902-2115 bp Feature: domain Description: GIIM Note: maturase Location: 1902-2115 bp Feature: gene Location: 2778-2993 bp Feature: gene Location: 2990-3184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JPFU01000002.1 Streptococcus mitis strain SK629 gsmSK629.contig.1_1, whole genome shotgun sequence (163847 bp)
Overview 1 RT 1: 112990-119290 bp Neighborhood of RT #1 [112990, 119290] PRK14508 P_ylase RVT-GII GIIM Feature: gene Location: 112990-114507 bp Feature: domain Description: PRK14508 Location: 112996-114475 bp Feature: domain Description: PRK14 508 Location: 112996-114 4 75 bp Feature: gene Location: 114533-116791 bp Feature: domain Description: P_ylase Location: 114557-116786 bp Feature: domain Description: P_ylase Location: 114 557-116786 bp Feature: gene Location: 117372-118649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117576-118191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117576-118191 bp Feature: domain Description: GIIM Note: maturase Location: 118245-118458 bp Feature: domain Description: GIIM Note: maturase Location: 11824 5-1184 58 bp Feature: gene Location: 118858-119064 bp Feature: gene Location: 119120-119290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14508 (4-alpha-glucanotransferase; Provisional), P_ylase (TIGR02093), RVT-GII, GIIM (pfam08388)

Seq: JPFU01000008.1 Streptococcus mitis strain SK629 gsmSK629.contig.7_1, whole genome shotgun sequence (120001 bp)
Overview 1 RT 1: 5690-10530 bp Neighborhood of RT #1 [5690, 10730] OpuBA OpuBB PBP2_ChoS RVT-GII GIIM ECF_trnsprt Feature: gene Location: 5690-6418 bp Feature: domain Description: OpuBA Location: 5693-6407 bp Feature: domain Description: OpuBA Location: 5 693-6407 bp Feature: gene Location: 6411-7931 bp Feature: domain Description: OpuBB Location: 6420-7029 bp Feature: domain Description: OpuBB Location: 6420-7029 bp Feature: domain Description: PBP2_ChoS Location: 7122-7908 bp Feature: domain Description: PBP2_ChoS Location: 7122-7908 bp Feature: gene Location: 8524-9582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8728-9343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8728-9343 bp Feature: domain Description: GIIM Note: maturase Location: 9397-9574 bp Feature: domain Description: GIIM Note: maturase Location: 9397-95 74 bp Feature: gene Location: 9619-9801 bp Feature: gene Location: 10128-10730 bp Feature: domain Description: ECF_trnsprt Location: 10260-10530 bp Feature: domain Description: ECF_trnsprt Location: 10260-105 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OpuBA (COG1125), OpuBB (COG1174), PBP2_ChoS (cd13610), RVT-GII, GIIM (pfam08388)

Seq: JPFU01000015.1 Streptococcus mitis strain SK629 gsmSK629.contig.14_1, whole genome shotgun sequence (213709 bp)
Overview 1 RT 1: 209942-213458 bp Neighborhood of RT #1 [209942, 213458] phero_cyc_pep HTH_XRE RGG_Cterm RVT-GII GIIM Feature: gene Location: 209942-210055 bp Feature: domain Description: phero_cyc_pep Location: 209993-210053 bp Feature: domain Description: phero_cyc_pep Location: 209993-210053 bp Feature: gene Location: 210088-210951 bp Feature: domain Description: HTH_XRE Location: 210103-210271 bp Feature: domain Description: HTH_XRE Location: 210103-210271 bp Feature: domain Description: RGG_Cterm Location: 210277-210937 bp Feature: domain Description: RGG_Cterm Location: 210277-210937 bp Feature: gene Location: 211395-212672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211599-212214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211599-212214 bp Feature: domain Description: GIIM Note: maturase Location: 212268-212481 bp Feature: domain Description: GIIM Note: maturase Location: 21226 8-212481 bp Feature: gene Location: 213261-213458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phero_cyc_pep (TIGR04079), HTH_XRE (smart00530), RGG_Cterm (TIGR01716), RVT-GII, GIIM (pfam08388)