myRT

myRT report for GCA_000723485.1_ASP_PRJEB557_v1

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Seq: LK054223.1 Vibrio nigripulchritudo MADA3029 genomic scaffold, ASP_2419, whole genome shotgun sequence (6146569 bp)
Overview 1 RT 1: 967147-971248 bp 2 RT 2: 2314764-2324672 bp Neighborhood of RT #1 [967147, 971442] RVT_N RVT-GII GIIM HNHc PRK15426 PRK15426 Neighborhood of RT #2 [2314764, 2325010] RVT-Retrons SpoIVFB TPR Peptidase_C39A PEP_TPR_lipo TPR TPR TPR PEP_TPR_lipo TPR TPR Fis1 Feature: gene Location: 967147-967272 bp Feature: gene Location: 967230-967346 bp Feature: gene Location: 967677-969353 bp Feature: RT Description: RVT_N Location: 967734-967977 bp Feature: RT Description: RVT_N Location: 967734-967977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968022-968667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968022-968667 bp Feature: domain Description: GIIM Note: maturase Location: 968718-968952 bp Feature: domain Description: GIIM Note: maturase Location: 96871 8-968952 bp Feature: domain Description: HNHc Note: nucleases Location: 969168-969330 bp Feature: domain Description: HNHc Note: nucleases Location: 9691 68-969330 bp Feature: gene Location: 968097-968381 bp Feature: gene Location: 969991-971442 bp Feature: domain Description: PRK15426 Location: 970336-970840 bp Feature: domain Description: PRK1 5426 Location: 970336-970840 bp Feature: domain Description: PRK15426 Location: 971116-971248 bp Feature: domain Description: PRK1 5426 Location: 971 1 1 6-971 248 bp Feature: gene Location: 2314764-2316419 bp Feature: gene Location: 2316416-2316835 bp Feature: gene Location: 2316828-2318678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2317431-2318046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 231 7431 -231 8046 bp Feature: gene Location: 2318736-2319815 bp Feature: domain Description: SpoIVFB Location: 2319063-2319741 bp Feature: domain Description: SpoIVFB Location: 231 9063-231 9741 bp Feature: gene Location: 2320037-2325010 bp Feature: domain Description: TPR Location: 2320697-2320889 bp Feature: domain Description: TPR Location: 2320697-2320889 bp Feature: domain Description: Peptidase_C39A Location: 2320982-2321306 bp Feature: domain Description: Peptidase_C39A Location: 2320982-2321 306 bp Feature: domain Description: PEP_TPR_lipo Location: 2321873-2322173 bp Feature: domain Description: PEP_TPR_lipo Location: 2321 873-23221 73 bp Feature: domain Description: TPR Location: 2322254-2322509 bp Feature: domain Description: TPR Location: 2322254-2322509 bp Feature: domain Description: TPR Location: 2322536-2322848 bp Feature: domain Description: TPR Location: 2322536-2322848 bp Feature: domain Description: TPR Location: 2322944-2323175 bp Feature: domain Description: TPR Location: 2322944-23231 75 bp Feature: domain Description: PEP_TPR_lipo Location: 2323184-2323367 bp Feature: domain Description: PEP_TPR_lipo Location: 23231 84-2323367 bp Feature: domain Description: TPR Location: 2323475-2323751 bp Feature: domain Description: TPR Location: 2323475-2323751 bp Feature: domain Description: TPR Location: 2323790-2324027 bp Feature: domain Description: TPR Location: 2323790-2324027 bp Feature: domain Description: Fis1 Location: 2324579-2324672 bp Feature: domain Description: Fis1 Location: 2324579-2324672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK15426 (cellulose biosynthesis regulator YedQ), RVT-Retrons, SpoIVFB (COG1994), TPR (smart00028), Peptidase_C39A (cd02549), PEP_TPR_lipo (TIGR02917)
Fis1 (cl21750)