myRT

myRT report for GCA_000723525.1_PRJEB5510_assembly_1

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Seq: CCDJ010000004.1 Halobacillus trueperi WGS project CCDJ000000000 data, strain HT-01, contig 000004, whole genome shotgun sequence (646506 bp)
Overview 1 RT 1: 297251-302060 bp Neighborhood of RT #1 [297251, 302086] PRK00648 RadC RVT-GII Intron_maturas2 PRK00024 GDPD Feature: gene Location: 297251-297967 bp Feature: domain Description: PRK00648 Location: 297404-297953 bp Feature: domain Description: PRK00648 Location: 297404-297953 bp Feature: gene Location: 297964-298584 bp Feature: domain Description: RadC Location: 298039-298564 bp Feature: domain Description: RadC Location: 298039-298564 bp Feature: gene Location: 299129-300559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299387-300095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299387-300095 bp Feature: domain Description: Intron_maturas2 Location: 300260-300452 bp Feature: domain Description: Intron_maturas2 Location: 300260-300452 bp Feature: gene Location: 300745-300933 bp Feature: domain Description: PRK00024 Location: 300796-300928 bp Feature: domain Description: PRK00024 Location: 300796-300928 bp Feature: gene Location: 301256-302086 bp Feature: domain Description: GDPD Location: 301373-302060 bp Feature: domain Description: GDPD Location: 301 373-302060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00648 (Maf-like protein; Reviewed), RadC (pfam04002), RVT-GII, Intron_maturas2 (pfam01348), PRK00024 (DNA repair protein RadC), GDPD (pfam03009)

Seq: CCDJ010000002.1 Halobacillus trueperi WGS project CCDJ000000000 data, strain HT-01, contig 000002, whole genome shotgun sequence (631314 bp)
Overview 1 RT 1: 24347-28631 bp 2 RT 2: 42058-52874 bp Neighborhood of RT #1 [24347, 28631] RVT-GII HNHc Neighborhood of RT #2 [42058, 52879] TraC-F-type Lysozyme_like RVT-GII HNHc RVT-GII HNHc Lysozyme_like RVT-GII Intron_maturas2 HNHc NlpD Feature: gene Location: 24347-24601 bp Feature: gene Location: 24793-25017 bp Feature: gene Location: 25808-27622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26099-26798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6099-2 6798 bp Feature: domain Description: HNHc Note: nucleases Location: 27353-27491 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7353-2 7491 bp Feature: gene Location: 27730-28035 bp Feature: gene Location: 28149-28631 bp Feature: gene Location: 42058-43980 bp Feature: domain Description: TraC-F-type Location: 42766-43894 bp Feature: domain Description: TraC-F-type Location: 42 766-43894 bp Feature: gene Location: 43983-44366 bp Feature: domain Description: Lysozyme_like Location: 44184-44331 bp Feature: domain Description: Lysozyme_like Location: 44184-44331 bp Feature: gene Location: 45010-46815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45304-46000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45304-46000 bp Feature: domain Description: HNHc Note: nucleases Location: 46564-46699 bp Feature: domain Description: HNHc Note: nucleases Location: 46564-46699 bp Feature: gene Location: 47832-49601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48090-48801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48090-48801 bp Feature: domain Description: HNHc Note: nucleases Location: 49365-49500 bp Feature: domain Description: HNHc Note: nucleases Location: 49365-49500 bp Feature: gene Location: 49690-49896 bp Feature: domain Description: Lysozyme_like Location: 49720-49888 bp Feature: domain Description: Lysozyme_like Location: 4972 0-49888 bp Feature: gene Location: 50470-52293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50734-51568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50734-51568 bp Feature: domain Description: Intron_maturas2 Location: 51640-51988 bp Feature: domain Description: Intron_maturas2 Location: 51640-51988 bp Feature: domain Description: HNHc Note: nucleases Location: 52114-52267 bp Feature: domain Description: HNHc Note: nucleases Location: 52 114-52 2 67 bp Feature: gene Location: 52290-52427 bp Feature: gene Location: 52484-52879 bp Feature: domain Description: NlpD Location: 52514-52874 bp Feature: domain Description: NlpD Location: 52 514-52 874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), Lysozyme_like (pfam13702), Intron_maturas2 (pfam01348), NlpD (COG0739)

Seq: CCDJ010000001.1 Halobacillus trueperi WGS project CCDJ000000000 data, strain HT-01, contig 000001, whole genome shotgun sequence (1271989 bp)
Overview 1 RT 1: 64647-70048 bp 2 RT 2: 166719-173225 bp 3 RT 3: 835501-841190 bp Neighborhood of RT #1 [64647, 70048] APH RVT-GII HNHc Neighborhood of RT #2 [166719, 173245] COG4584 Nudix_Hydrolase RVT-GII HNHc CTP_transf_1 Neighborhood of RT #3 [835501, 841190] Nudix_Hydrolase_18 RVT-GII TauE Feature: gene Location: 64647-65441 bp Feature: domain Description: APH Location: 64998-65157 bp Feature: domain Description: APH Location: 64998-65157 bp Feature: gene Location: 65743-66270 bp Feature: gene Location: 66671-68485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66962-67661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66962-67661 bp Feature: domain Description: HNHc Note: nucleases Location: 68216-68354 bp Feature: domain Description: HNHc Note: nucleases Location: 68216-683 54 bp Feature: gene Location: 69227-69385 bp Feature: gene Location: 69476-70048 bp Feature: gene Location: 166719-168272 bp Feature: domain Description: COG4584 Location: 166728-167586 bp Feature: domain Description: COG4584 Location: 166728-167586 bp Feature: gene Location: 168813-169223 bp Feature: domain Description: Nudix_Hydrolase Location: 168834-169158 bp Feature: domain Description: Nudix_Hydrolase Location: 16883 4-169158 bp Feature: gene Location: 169420-171234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169711-170410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169711-170410 bp Feature: domain Description: HNHc Note: nucleases Location: 170965-171103 bp Feature: domain Description: HNHc Note: nucleases Location: 170965-171103 bp Feature: gene Location: 172034-172387 bp Feature: gene Location: 172610-173245 bp Feature: domain Description: CTP_transf_1 Location: 172679-173225 bp Feature: domain Description: CTP_transf_1 Location: 172679-173 225 bp Feature: gene Location: 835501-836016 bp Feature: gene Location: 836674-837141 bp Feature: domain Description: Nudix_Hydrolase_18 Location: 836734-837124 bp Feature: domain Description: Nudix_Hydrolase_18 Location: 83 673 4-83 7124 bp Feature: gene Location: 838016-839110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838307-839006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 83 07-83 9006 bp Feature: gene Location: 840011-840898 bp Feature: domain Description: TauE Location: 840200-840875 bp Feature: domain Description: TauE Location: 840200-840875 bp Feature: gene Location: 840969-841190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), RVT-GII, HNHc (smart00507), COG4584 (Transposase ), Nudix_Hydrolase (cl00447), CTP_transf_1 (pfam01148), Nudix_Hydrolase_18 (cd04677), TauE (pfam01925)

Seq: CCDJ010000003.1 Halobacillus trueperi WGS project CCDJ000000000 data, strain HT-01, contig 000003, whole genome shotgun sequence (1293991 bp)
Overview 1 RT 1: 291414-299330 bp 2 RT 2: 677389-681936 bp 3 RT 3: 837253-846708 bp 4 RT 4: 967671-974951 bp Neighborhood of RT #1 [291414, 299330] PucR BCCT RVT-GII HNHc Neighborhood of RT #2 [677389, 681936] RVT-GII HNHc Neighborhood of RT #3 [837253, 846708] Caa3_CtaG NT_KNTase_like RVT-GII HNHc PRK08298 RimL RVT-GII HNHc PRK13354 Neighborhood of RT #4 [967671, 975097] DUF3021 RVT-GII Intron_maturas2 HNHc Lysozyme_like RVT-GII HNHc CwlT_like TDT_like_1 Feature: gene Location: 291414-293105 bp Feature: domain Description: PucR Location: 291594-293088 bp Feature: domain Description: PucR Location: 291594 -293088 bp Feature: gene Location: 293430-295022 bp Feature: domain Description: BCCT Location: 293481-294951 bp Feature: domain Description: BCCT Location: 2934 81-294 951 bp Feature: gene Location: 295409-297223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295700-296399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295700-296399 bp Feature: domain Description: HNHc Note: nucleases Location: 296954-297092 bp Feature: domain Description: HNHc Note: nucleases Location: 296954 -297092 bp Feature: gene Location: 297900-298208 bp Feature: gene Location: 299190-299330 bp Feature: gene Location: 677389-677595 bp Feature: gene Location: 677794-677955 bp Feature: gene Location: 678119-679933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678410-679109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6784 10-679109 bp Feature: domain Description: HNHc Note: nucleases Location: 679664-679802 bp Feature: domain Description: HNHc Note: nucleases Location: 679664 -679802 bp Feature: gene Location: 680966-681307 bp Feature: gene Location: 681613-681936 bp Feature: gene Location: 837253-838050 bp Feature: domain Description: Caa3_CtaG Location: 837340-838012 bp Feature: domain Description: Caa3_CtaG Location: 83734 0-838012 bp Feature: gene Location: 838172-838792 bp Feature: domain Description: NT_KNTase_like Location: 838193-838406 bp Feature: domain Description: NT_KNTase_like Location: 838193-8384 06 bp Feature: gene Location: 838949-840763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839240-839939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83924 0-839939 bp Feature: domain Description: HNHc Note: nucleases Location: 840494-840632 bp Feature: domain Description: HNHc Note: nucleases Location: 84 04 94 -84 0632 bp Feature: gene Location: 841522-841941 bp Feature: domain Description: PRK08298 Location: 841531-841924 bp Feature: domain Description: PRK08298 Location: 84 1531-84 1924 bp Feature: gene Location: 842112-842669 bp Feature: domain Description: RimL Location: 842148-842667 bp Feature: domain Description: RimL Location: 84 214 8-84 2667 bp Feature: gene Location: 842935-844749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843226-843925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 3226-84 3925 bp Feature: domain Description: HNHc Note: nucleases Location: 844480-844618 bp Feature: domain Description: HNHc Note: nucleases Location: 84 4 4 80-84 4 618 bp Feature: gene Location: 845457-846563 bp Feature: domain Description: PRK13354 Location: 845460-846552 bp Feature: domain Description: PRK13354 Location: 84 54 60-84 6552 bp Feature: gene Location: 846526-846708 bp Feature: gene Location: 967671-968084 bp Feature: domain Description: DUF3021 Location: 967692-968070 bp Feature: domain Description: DUF3021 Location: 967692-968070 bp Feature: gene Location: 968214-968351 bp Feature: gene Location: 968348-970171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968612-969446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968612-9694 4 6 bp Feature: domain Description: Intron_maturas2 Location: 969518-969866 bp Feature: domain Description: Intron_maturas2 Location: 969518-969866 bp Feature: domain Description: HNHc Note: nucleases Location: 969992-970145 bp Feature: domain Description: HNHc Note: nucleases Location: 969992-97014 5 bp Feature: gene Location: 970745-970951 bp Feature: domain Description: Lysozyme_like Location: 970775-970943 bp Feature: domain Description: Lysozyme_like Location: 970775-97094 3 bp Feature: gene Location: 971040-972809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971298-972009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971298-972009 bp Feature: domain Description: HNHc Note: nucleases Location: 972573-972708 bp Feature: domain Description: HNHc Note: nucleases Location: 972573-972708 bp Feature: gene Location: 973583-974020 bp Feature: domain Description: CwlT_like Location: 973757-974003 bp Feature: domain Description: CwlT_like Location: 973757-974 003 bp Feature: gene Location: 974108-975097 bp Feature: domain Description: TDT_like_1 Location: 974120-974951 bp Feature: domain Description: TDT_like_1 Location: 974 120-974 951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PucR (pfam07905), BCCT (pfam02028), RVT-GII, HNHc (smart00507), Caa3_CtaG (pfam09678), NT_KNTase_like (cd05403), PRK08298 (cytidine deaminase; Validated), RimL (COG1670), PRK13354 (tyrosyl-tRNA synthetase; Provisional), DUF3021 (pfam11457)
Intron_maturas2 (pfam01348), Lysozyme_like (pfam13702), CwlT_like, TDT_like_1 (cd09319)