myRT

myRT report for GCA_000723805.1_ASP_PRJEB562_v1

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Seq: LK391963.1 Vibrio nigripulchritudo SO65 genomic scaffold, ASP_2427, whole genome shotgun sequence (6166071 bp)
Overview 1 RT 1: 1239938-1244902 bp 2 RT 2: 2330565-2340472 bp 3 RT 3: 4393217-4399181 bp Neighborhood of RT #1 [1239938, 1244922] COG3530 RVT-Retrons AAA_15 AAA_15 CIA30 Neighborhood of RT #2 [2330565, 2340810] RVT-Retrons SpoIVFB TPR Peptidase_C39A PEP_TPR_lipo TPR TPR TPR TPR TPR TPR_19 Fis1 Neighborhood of RT #3 [4393217, 4399189] TIGR02646 SLR COG3950 COG3950 RVT-Retrons YpwA RhtB Feature: gene Location: 1239938-1240153 bp Ori: CCN77842.1 Feature: domain Description: COG3530 Location: 1239944-1240148 bp Feature: domain Description: COG3530 Location: 1 239944-1 2401 48 bp Feature: gene Location: 1240193-1240435 bp Feature: gene Location: 1241378-1242325 bp Ori: CCN77844.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1241492-1242044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 241 492-1 242044 bp Feature: gene Location: 1242325-1243677 bp Ori: CCN77845.1 Feature: domain Description: AAA_15 Location: 1242358-1242538 bp Feature: domain Description: AAA_1 5 Location: 1 242358-1 242538 bp Feature: domain Description: AAA_15 Location: 1242676-1243066 bp Feature: domain Description: AAA_1 5 Location: 1 242676-1 243066 bp Feature: gene Location: 1244440-1244922 bp Ori: CCN77846.1 Feature: domain Description: CIA30 Location: 1244446-1244902 bp Feature: domain Description: CIA30 Location: 1 244446-1 244902 bp Feature: gene Location: 2330565-2332220 bp Feature: gene Location: 2332217-2332636 bp Feature: gene Location: 2332629-2334479 bp Ori: CCN78959.1 Gene: ret Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2333232-2333847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2333232-2333847 bp Feature: gene Location: 2334537-2335616 bp Ori: CCN78960.1 Feature: domain Description: SpoIVFB Location: 2334864-2335542 bp Feature: domain Description: SpoIVFB Location: 2334864-2335542 bp Feature: gene Location: 2335837-2340810 bp Ori: CCN78961.1 Feature: domain Description: TPR Location: 2336497-2336689 bp Feature: domain Description: TPR Location: 2336497-2336689 bp Feature: domain Description: Peptidase_C39A Location: 2336782-2337106 bp Feature: domain Description: Peptidase_C39A Location: 2336782-23371 06 bp Feature: domain Description: PEP_TPR_lipo Location: 2337673-2337973 bp Feature: domain Description: PEP_TPR_lipo Location: 2337673-2337973 bp Feature: domain Description: TPR Location: 2338054-2338309 bp Feature: domain Description: TPR Location: 2338054-2338309 bp Feature: domain Description: TPR Location: 2338336-2338648 bp Feature: domain Description: TPR Location: 2338336-2338648 bp Feature: domain Description: TPR Location: 2338699-2338924 bp Feature: domain Description: TPR Location: 2338699-2338924 bp Feature: domain Description: TPR Location: 2338951-2339173 bp Feature: domain Description: TPR Location: 2338951 -23391 73 bp Feature: domain Description: TPR Location: 2339275-2339554 bp Feature: domain Description: TPR Location: 2339275-2339554 bp Feature: domain Description: TPR_19 Location: 2339704-2339821 bp Feature: domain Description: TPR_1 9 Location: 2339704-2339821 bp Feature: domain Description: Fis1 Location: 2340379-2340472 bp Feature: domain Description: Fis1 Location: 2340379-2340472 bp Feature: gene Location: 4393217-4394005 bp Ori: CCN75455.1 Feature: domain Description: TIGR02646 Location: 4393289-4393823 bp Feature: domain Description: TIGR02646 Location: 4393289-4393823 bp Feature: gene Location: 4393989-4395617 bp Ori: CCN75456.1 Feature: domain Description: SLR Location: 4394034-4394154 bp Feature: domain Description: SLR Location: 4394034-43941 54 bp Feature: domain Description: COG3950 Location: 4394178-4394811 bp Feature: domain Description: COG3950 Location: 43941 78-439481 1 bp Feature: domain Description: COG3950 Location: 4395012-4395585 bp Feature: domain Description: COG3950 Location: 439501 2-4395585 bp Feature: gene Location: 4395619-4396557 bp Ori: CCN75457.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4395718-4396315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 439571 8-439631 5 bp Feature: gene Location: 4396892-4398373 bp Gene: mcar Feature: domain Description: YpwA Location: 4396901-4398371 bp Feature: domain Description: YpwA Location: 4396901 -4398371 bp Feature: gene Location: 4398557-4399189 bp Ori: CCN75459.1 Feature: domain Description: RhtB Location: 4398560-4399181 bp Feature: domain Description: RhtB Location: 4398560-43991 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3530 (Uncharacterized conserved protein, DUF3820 family ), RVT-Retrons, AAA_15 (pfam13175), CIA30 (pfam08547), SpoIVFB (COG1994), TPR (smart00028), Peptidase_C39A (cd02549), PEP_TPR_lipo (TIGR02917), TPR_19 (pfam14559), Fis1 (cl21750)
TIGR02646 (TIGR02646 family protein), SLR (sd00010), COG3950 (Predicted ATP-binding protein involved in virulence ), YpwA (COG2317), RhtB (COG1280)