myRT

myRT report for GCA_000723905.1_PRJEB5512_assembly_1

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Seq: CCDN010000001.1 Bacillus vietnamensis WGS project CCDN000000000 data, strain HD-02, contig 00001, whole genome shotgun sequence (1954480 bp)
Overview 1 RT 1: 339178-342788 bp 2 RT 2: 1499897-1505822 bp Neighborhood of RT #1 [339178, 342811] RVT-GII GIIM VOC_like VOC_like AraC Neighborhood of RT #2 [1499897, 1505824] PRK07726 Toprim_Crpt RVT-GII GIIM PepP Feature: gene Location: 339178-339306 bp Feature: gene Location: 339688-340080 bp Feature: gene Location: 340174-341439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340375-340993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340375-340993 bp Feature: domain Description: GIIM Note: maturase Location: 341041-341248 bp Feature: domain Description: GIIM Note: maturase Location: 341 041 -341 248 bp Feature: gene Location: 341517-341894 bp Feature: domain Description: VOC_like Location: 341550-341619 bp Feature: domain Description: VOC_like Location: 341 550-341 61 9 bp Feature: domain Description: VOC_like Location: 341697-341877 bp Feature: domain Description: VOC_like Location: 341 697-341 877 bp Feature: gene Location: 341948-342811 bp Feature: domain Description: AraC Location: 342470-342788 bp Feature: domain Description: AraC Location: 342470-342788 bp Feature: gene Location: 1499897-1502059 bp Feature: domain Description: PRK07726 Location: 1499900-1501841 bp Feature: domain Description: PRK07726 Location: 1 499900-1 501 841 bp Feature: domain Description: Toprim_Crpt Location: 1501874-1502051 bp Feature: domain Description: Toprim_Crpt Location: 1 501 874-1 502051 bp Feature: gene Location: 1502245-1502688 bp Feature: gene Location: 1502873-1504138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503074-1503692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 503074-1 503692 bp Feature: domain Description: GIIM Note: maturase Location: 1503740-1503947 bp Feature: domain Description: GIIM Note: maturase Location: 1 503740-1 503947 bp Feature: gene Location: 1504232-1504624 bp Feature: gene Location: 1504727-1505824 bp Feature: domain Description: PepP Location: 1504733-1505822 bp Feature: domain Description: PepP Location: 1 504733-1 505822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), VOC_like (cd16355), AraC (COG2207), PRK07726 (DNA topoisomerase 3), Toprim_Crpt (pfam13342), PepP (COG0006)

Seq: CCDN010000002.1 Bacillus vietnamensis WGS project CCDN000000000 data, strain HD-02, contig 00002, whole genome shotgun sequence (961145 bp)
Overview 1 RT 1: 487013-493396 bp Neighborhood of RT #1 [487013, 493422] Transposase_mut RVT-UG1 nitrilase HTH_3 NTP-PPase_COG4997 Feature: gene Location: 487013-487402 bp Feature: gene Location: 487816-488976 bp Feature: domain Description: Transposase_mut Location: 487819-488944 bp Feature: domain Description: Transposase_mut Location: 487819-488944 bp Feature: gene Location: 489108-492329 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 489174-489636 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 489174-489636 bp Feature: domain Description: nitrilase Location: 491592-492249 bp Feature: domain Description: nitrilase Location: 491592 -492 2 49 bp Feature: gene Location: 492594-492854 bp Feature: domain Description: HTH_3 Location: 492645-492801 bp Feature: domain Description: HTH_3 Location: 492 645-492 801 bp Feature: gene Location: 493099-493422 bp Feature: domain Description: NTP-PPase_COG4997 Location: 493111-493396 bp Feature: domain Description: NTP-PPase_COG4997 Location: 493111-493396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-UG1, nitrilase (cl11424), HTH_3 (pfam01381), NTP-PPase_COG4997 (cd11532)

Seq: CCDN010000008.1 Bacillus vietnamensis WGS project CCDN000000000 data, strain HD-02, contig 00008, whole genome shotgun sequence (278492 bp)
Overview 1 RT 1: 35267-39936 bp 2 RT 2: 260569-266214 bp Neighborhood of RT #1 [35267, 39938] KOG4409 RVT-GII GIIM PIG-L COG4299 Neighborhood of RT #2 [260569, 266285] PRK06767 RVT-GII GIIM ZnuA YejR Feature: gene Location: 35267-36007 bp Feature: domain Description: KOG4409 Location: 35552-35648 bp Feature: domain Description: KOG4409 Location: 3 5552-3 5648 bp Feature: gene Location: 36117-36509 bp Feature: gene Location: 36603-37868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36804-37422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6804-3 7422 bp Feature: domain Description: GIIM Note: maturase Location: 37470-37677 bp Feature: domain Description: GIIM Note: maturase Location: 3 7470-3 7677 bp Feature: gene Location: 37920-38672 bp Feature: domain Description: PIG-L Location: 38019-38415 bp Feature: domain Description: PIG-L Location: 3 8019-3 8415 bp Feature: gene Location: 38793-39938 bp Feature: domain Description: COG4299 Location: 38844-39936 bp Feature: domain Description: COG4299 Location: 3 8844-3 993 6 bp Feature: gene Location: 260569-261753 bp Feature: domain Description: PRK06767 Location: 260578-261745 bp Feature: domain Description: PRK06767 Location: 260578-261745 bp Feature: gene Location: 261889-262281 bp Feature: gene Location: 262375-263640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262576-263194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262576-263 194 bp Feature: domain Description: GIIM Note: maturase Location: 263242-263449 bp Feature: domain Description: GIIM Note: maturase Location: 263 242-263 449 bp Feature: gene Location: 263728-264768 bp Feature: domain Description: ZnuA Location: 263764-264763 bp Feature: domain Description: ZnuA Location: 263 764-264763 bp Feature: gene Location: 265095-266285 bp Feature: domain Description: YejR Location: 265113-266214 bp Feature: domain Description: YejR Location: 265113 -266214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4409 (KOG4409, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) ), RVT-GII, GIIM (pfam08388), PIG-L (pfam02585), COG4299 (Predicted acyltransferase ), PRK06767 (methionine gamma-lyase; Provisional), ZnuA (pfam01297), YejR (COG0523)