myRT

myRT report for GCA_000724105.1_PRJEB5508_assembly_1

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Seq: CCDH010000001.1 Halobacillus dabanensis WGS project CCDH000000000 data, strain HD-02, contig 000001, whole genome shotgun sequence (1628827 bp)
Overview 1 RT 1: 383538-388359 bp 2 RT 2: 1005594-1011283 bp Neighborhood of RT #1 [383538, 388373] GDPD PRK00024 RVT-GII Intron_maturas2 RadC PRK00648 Neighborhood of RT #2 [1005594, 1011283] TauE RVT-GII Nudix_Hydrolase_18 Feature: gene Location: 383538-384368 bp Feature: domain Description: GDPD Location: 383655-384342 bp Feature: domain Description: GDPD Location: 383655-384342 bp Feature: gene Location: 384691-384879 bp Feature: domain Description: PRK00024 Location: 384742-384874 bp Feature: domain Description: PRK00024 Location: 384742-384874 bp Feature: gene Location: 385065-386495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385323-386031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385323-386031 bp Feature: domain Description: Intron_maturas2 Location: 386196-386388 bp Feature: domain Description: Intron_maturas2 Location: 3861 96-386388 bp Feature: gene Location: 387040-387660 bp Feature: domain Description: RadC Location: 387115-387640 bp Feature: domain Description: RadC Location: 3871 1 5-387640 bp Feature: gene Location: 387657-388373 bp Feature: domain Description: PRK00648 Location: 387810-388359 bp Feature: domain Description: PRK00648 Location: 38781 0-388359 bp Feature: gene Location: 1005594-1005815 bp Feature: gene Location: 1005886-1006773 bp Feature: domain Description: TauE Location: 1006075-1006750 bp Feature: domain Description: TauE Location: 1 006075-1 006750 bp Feature: gene Location: 1007674-1008768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007965-1008664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 007965-1 008664 bp Feature: gene Location: 1009643-1010110 bp Feature: domain Description: Nudix_Hydrolase_18 Location: 1009703-1010093 bp Feature: domain Description: Nudix_Hydrolase_1 8 Location: 1 009703-1 01 0093 bp Feature: gene Location: 1010768-1011283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD (pfam03009), PRK00024 (DNA repair protein RadC), RVT-GII, Intron_maturas2 (pfam01348), RadC (pfam04002), PRK00648 (Maf-like protein; Reviewed), TauE (pfam01925), Nudix_Hydrolase_18 (cd04677)

Seq: CCDH010000003.1 Halobacillus dabanensis WGS project CCDH000000000 data, strain HD-02, contig 000003, whole genome shotgun sequence (866875 bp)
Overview 1 RT 1: 570728-578076 bp Neighborhood of RT #1 [570728, 578222] NlpD RVT-GII Intron_maturas2 HNHc Lysozyme_like RVT-GII HNHc CwlT_like TDT_like_1 Feature: gene Location: 570728-571123 bp Feature: domain Description: NlpD Location: 570758-571118 bp Feature: domain Description: NlpD Location: 570758-571118 bp Feature: gene Location: 571327-571476 bp Feature: gene Location: 571473-573296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571737-572571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571737-572 571 bp Feature: domain Description: Intron_maturas2 Location: 572643-572991 bp Feature: domain Description: Intron_maturas2 Location: 572 643-572 991 bp Feature: domain Description: HNHc Note: nucleases Location: 573117-573270 bp Feature: domain Description: HNHc Note: nucleases Location: 573117-5732 70 bp Feature: gene Location: 573870-574076 bp Feature: domain Description: Lysozyme_like Location: 573900-574068 bp Feature: domain Description: Lysozyme_like Location: 573900-574068 bp Feature: gene Location: 574165-575934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574423-575134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57442 3-575134 bp Feature: domain Description: HNHc Note: nucleases Location: 575698-575833 bp Feature: domain Description: HNHc Note: nucleases Location: 575698-575833 bp Feature: gene Location: 576708-577145 bp Feature: domain Description: CwlT_like Location: 576882-577128 bp Feature: domain Description: CwlT_like Location: 576882 -57712 8 bp Feature: gene Location: 577233-578222 bp Feature: domain Description: TDT_like_1 Location: 577245-578076 bp Feature: domain Description: TDT_like_1 Location: 5772 45-578076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Lysozyme_like (pfam13702), CwlT_like, TDT_like_1 (cd09319)

Seq: CCDH010000004.1 Halobacillus dabanensis WGS project CCDH000000000 data, strain HD-02, contig 000004, whole genome shotgun sequence (180972 bp)
Overview 1 RT 1: 113180-120937 bp Neighborhood of RT #1 [113180, 121221] RVT-GII HNHc RVT-GII HNHc APH Feature: gene Location: 113180-113752 bp Feature: gene Location: 113843-114001 bp Feature: gene Location: 114743-116557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115034-115733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11503 4-11573 3 bp Feature: domain Description: HNHc Note: nucleases Location: 116288-116426 bp Feature: domain Description: HNHc Note: nucleases Location: 116288-116426 bp Feature: gene Location: 117383-119197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117674-118373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117674-1183 73 bp Feature: domain Description: HNHc Note: nucleases Location: 118928-119066 bp Feature: domain Description: HNHc Note: nucleases Location: 118928-119066 bp Feature: gene Location: 119598-120125 bp Feature: gene Location: 120427-121221 bp Feature: domain Description: APH Location: 120778-120937 bp Feature: domain Description: APH Location: 120778-12093 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), APH (pfam01636)

Seq: CCDH010000002.1 Halobacillus dabanensis WGS project CCDH000000000 data, strain HD-02, contig 000002, whole genome shotgun sequence (1030520 bp)
Overview 1 RT 1: 292268-300583 bp 2 RT 2: 678722-685923 bp 3 RT 3: 843834-851997 bp 4 RT 4: 975169-986141 bp 5 RT 5: 999654-1008160 bp Neighborhood of RT #1 [292268, 300583] PucR BCCT RVT-GII HNHc Neighborhood of RT #2 [678722, 685923] RVT-GII HNHc RVT-GII HNHc Neighborhood of RT #3 [843834, 851997] Caa3_CtaG NT_KNTase_like RVT-GII HNHc RVT-GII HNHc PRK13354 Neighborhood of RT #4 [975169, 986227] DUF3021 RVT-GII Intron_maturas2 HNHc Lysozyme_like RVT-GII HNHc RVT-GII HNHc Lysozyme_like TraC-F-type Neighborhood of RT #5 [999654, 1008160] RVT-GII HNHc PRK08298 RimL RVT-GII HNHc Feature: gene Location: 292268-293959 bp Feature: domain Description: PucR Location: 292448-293942 bp Feature: domain Description: PucR Location: 2924 4 8-29394 2 bp Feature: gene Location: 294284-295876 bp Feature: domain Description: BCCT Location: 294335-295805 bp Feature: domain Description: BCCT Location: 294 335-295805 bp Feature: gene Location: 296263-298077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296554-297253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296554 -297253 bp Feature: domain Description: HNHc Note: nucleases Location: 297808-297946 bp Feature: domain Description: HNHc Note: nucleases Location: 297808-29794 6 bp Feature: gene Location: 298973-299281 bp Feature: gene Location: 300443-300583 bp Feature: gene Location: 678722-678928 bp Feature: gene Location: 679127-679288 bp Feature: gene Location: 679452-681266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679743-680442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67974 3-6804 4 2 bp Feature: domain Description: HNHc Note: nucleases Location: 680997-681135 bp Feature: domain Description: HNHc Note: nucleases Location: 680997-681135 bp Feature: gene Location: 682106-683920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682397-683096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682397-683096 bp Feature: domain Description: HNHc Note: nucleases Location: 683651-683789 bp Feature: domain Description: HNHc Note: nucleases Location: 683651-683789 bp Feature: gene Location: 684953-685294 bp Feature: gene Location: 685600-685923 bp Feature: gene Location: 843834-844631 bp Feature: domain Description: Caa3_CtaG Location: 843921-844593 bp Feature: domain Description: Caa3_CtaG Location: 84 3921-84 4 593 bp Feature: gene Location: 844753-845373 bp Feature: domain Description: NT_KNTase_like Location: 844774-844987 bp Feature: domain Description: NT_KNTase_like Location: 84 4 774 -84 4 987 bp Feature: gene Location: 845530-847344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845821-846520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 5821-84 6520 bp Feature: domain Description: HNHc Note: nucleases Location: 847075-847213 bp Feature: domain Description: HNHc Note: nucleases Location: 84 7075-84 7213 bp Feature: gene Location: 848224-850038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848515-849214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 8515-84 9214 bp Feature: domain Description: HNHc Note: nucleases Location: 849769-849907 bp Feature: domain Description: HNHc Note: nucleases Location: 84 9769-84 9907 bp Feature: gene Location: 850746-851852 bp Feature: domain Description: PRK13354 Location: 850749-851841 bp Feature: domain Description: PRK13354 Location: 85074 9-85184 1 bp Feature: gene Location: 851815-851997 bp Feature: gene Location: 975169-975582 bp Feature: domain Description: DUF3021 Location: 975190-975568 bp Feature: domain Description: DUF3021 Location: 975190-975568 bp Feature: gene Location: 975712-975849 bp Feature: gene Location: 975846-977669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976110-976944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976110-97694 4 bp Feature: domain Description: Intron_maturas2 Location: 977016-977364 bp Feature: domain Description: Intron_maturas2 Location: 977016-977364 bp Feature: domain Description: HNHc Note: nucleases Location: 977490-977643 bp Feature: domain Description: HNHc Note: nucleases Location: 9774 90-97764 3 bp Feature: gene Location: 978243-978449 bp Feature: domain Description: Lysozyme_like Location: 978273-978441 bp Feature: domain Description: Lysozyme_like Location: 978273-9784 4 1 bp Feature: gene Location: 978538-980307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978796-979507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978796-979507 bp Feature: domain Description: HNHc Note: nucleases Location: 980071-980206 bp Feature: domain Description: HNHc Note: nucleases Location: 980071-980206 bp Feature: gene Location: 981470-983275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981764-982460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981764 -9824 60 bp Feature: domain Description: HNHc Note: nucleases Location: 983024-983159 bp Feature: domain Description: HNHc Note: nucleases Location: 983024 -983159 bp Feature: gene Location: 983919-984302 bp Feature: domain Description: Lysozyme_like Location: 984120-984267 bp Feature: domain Description: Lysozyme_like Location: 984 120-984 267 bp Feature: gene Location: 984305-986227 bp Feature: domain Description: TraC-F-type Location: 985013-986141 bp Feature: domain Description: TraC-F-type Location: 985013-98614 1 bp Feature: gene Location: 999654-1000136 bp Feature: gene Location: 1000250-1000555 bp Feature: gene Location: 1000663-1002477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1000954-1001653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1000954 -1001653 bp Feature: domain Description: HNHc Note: nucleases Location: 1002208-1002346 bp Feature: domain Description: HNHc Note: nucleases Location: 1002208-100234 6 bp Feature: gene Location: 1003351-1003770 bp Feature: domain Description: PRK08298 Location: 1003360-1003753 bp Feature: domain Description: PRK08298 Location: 1003360-1003753 bp Feature: gene Location: 1003941-1004498 bp Feature: domain Description: RimL Location: 1003977-1004496 bp Feature: domain Description: RimL Location: 1003977-1004 4 96 bp Feature: gene Location: 1004885-1006699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1005176-1005875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1005176-1005875 bp Feature: domain Description: HNHc Note: nucleases Location: 1006430-1006568 bp Feature: domain Description: HNHc Note: nucleases Location: 10064 30-1006568 bp Feature: gene Location: 1007490-1007714 bp Feature: gene Location: 1007906-1008160 bp 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Associated domains:myRT PucR (pfam07905), BCCT (pfam02028), RVT-GII, HNHc (smart00507), Caa3_CtaG (pfam09678), NT_KNTase_like (cd05403), PRK13354 (tyrosyl-tRNA synthetase; Provisional), DUF3021 (pfam11457), Intron_maturas2 (pfam01348), Lysozyme_like (pfam13702)
TraC-F-type (TIGR02746), PRK08298 (cytidine deaminase; Validated), RimL (COG1670)