myRT

myRT report for GCA_000724205.3_ASM72420v3

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Seq: JPGY02000001.1 Clostridium pasteurianum DSM 525 = ATCC 6013 ctg1, whole genome shotgun sequence (4373654 bp)
Overview 1 RT 1: 1124461-1129642 bp 2 RT 2: 2447193-2451044 bp 3 RT 3: 3631736-3642855 bp Neighborhood of RT #1 [1124461, 1129656] FeS_nifS NifU_clost RVT-GII GIIM YrrD PerM Neighborhood of RT #2 [2447193, 2451214] PRK07714 RVT-GII GIIM WrbA WrbA Neighborhood of RT #3 [3631736, 3642869] trans_reg_C MFS_MdfA_MDR_like RVT-GII RVT-GII pepcterm_ATPase HTH_32 rve Mu-transpos_C RVT-GII RVT-GII GIIM OmpR BaeS Feature: gene Location: 1124461-1125654 bp Ori: KRU11778.1 Feature: domain Description: FeS_nifS Location: 1124479-1125619 bp Feature: domain Description: FeS_nifS Location: 1 1 24479-1 1 2561 9 bp Feature: gene Location: 1125657-1126088 bp Ori: KRU11779.1 Feature: domain Description: NifU_clost Location: 1125666-1126020 bp Feature: domain Description: NifU_clost Location: 1 1 25666-1 1 26020 bp Feature: gene Location: 1126741-1128027 bp Ori: KRU11780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126990-1127674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 26990-1 1 27674 bp Feature: domain Description: GIIM Note: maturase Location: 1127746-1127971 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 27746-1 1 27971 bp Feature: gene Location: 1128132-1128659 bp Ori: KRU11781.1 Feature: domain Description: YrrD Location: 1128153-1128654 bp Feature: domain Description: YrrD Location: 1 1 281 53-1 1 28654 bp Feature: gene Location: 1128643-1129656 bp Ori: KRU11782.1 Feature: domain Description: PerM Location: 1128658-1129642 bp Feature: domain Description: PerM Location: 1 1 28658-1 1 29642 bp Feature: gene Location: 2447193-2447678 bp Ori: KRU13009.1 Feature: domain Description: PRK07714 Location: 2447460-2447604 bp Feature: domain Description: PRK0771 4 Location: 2447460-2447604 bp Feature: gene Location: 2448213-2448401 bp Feature: gene Location: 2448584-2449276 bp Ori: KRU13011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2448608-2448911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2448608-244891 1 bp Feature: domain Description: GIIM Note: maturase Location: 2448995-2449187 bp Feature: domain Description: GIIM Note: maturase Location: 2448995-24491 87 bp Feature: gene Location: 2449969-2450640 bp Ori: KRU13012.1 Feature: domain Description: WrbA Location: 2450107-2450275 bp Feature: domain Description: WrbA Location: 24501 07-2450275 bp Feature: gene Location: 2450633-2451214 bp Ori: KRU13013.1 Feature: domain Description: WrbA Location: 2450636-2451044 bp Feature: domain Description: WrbA Location: 2450636-2451 044 bp Feature: gene Location: 3631736-3632170 bp Ori: KRU14061.1 Feature: domain Description: trans_reg_C Location: 3631964-3632162 bp Feature: domain Description: trans_reg_C Location: 3631 964-36321 62 bp Feature: gene Location: 3632479-3633699 bp Ori: KRU14062.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 3632554-3633667 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 3632554-3633667 bp Feature: gene Location: 3634358-3634855 bp Ori: KRU14063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634607-3634844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634607-3634844 bp Feature: gene Location: 3635339-3636142 bp Ori: KRU14064.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635594-3636113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635594-36361 1 3 bp Feature: gene Location: 3636344-3637150 bp Ori: KRU14065.1 Feature: domain Description: pepcterm_ATPase Location: 3636347-3637133 bp Feature: domain Description: pepcterm_ATPase Location: 3636347-36371 33 bp Feature: gene Location: 3637166-3638428 bp Ori: KRU14066.1 Feature: domain Description: HTH_32 Location: 3637337-3637565 bp Feature: domain Description: HTH_32 Location: 3637337-3637565 bp Feature: domain Description: rve Location: 3637640-3637985 bp Feature: domain Description: rve Location: 3637640-3637985 bp Feature: domain Description: Mu-transpos_C Location: 3638165-3638327 bp Feature: domain Description: Mu-transpos_C Location: 36381 65-3638327 bp Feature: gene Location: 3638627-3639199 bp Feature: gene Location: 3639331-3639885 bp Ori: KRU14068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639367-3639538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639367-3639538 bp Feature: gene Location: 3639872-3640798 bp Ori: KRU14069.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639998-3640445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639998-3640445 bp Feature: domain Description: GIIM Note: maturase Location: 3640517-3640742 bp Feature: domain Description: GIIM Note: maturase Location: 364051 7-3640742 bp Feature: gene Location: 3640903-3641613 bp Ori: KRU14070.1 Feature: domain Description: OmpR Location: 3640930-3641590 bp Feature: domain Description: OmpR Location: 3640930-3641 590 bp Feature: gene Location: 3641610-3642869 bp Ori: KRU14071.1 Feature: domain Description: BaeS Location: 3641925-3642855 bp Feature: domain Description: BaeS Location: 3641 925-3642855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeS_nifS (TIGR03402), NifU_clost (TIGR03419), RVT-GII, GIIM (pfam08388), YrrD (COG3881), PerM (COG0628), PRK07714 (YlxQ family RNA-binding protein), WrbA (COG0655), trans_reg_C (cd00383), MFS_MdfA_MDR_like (cd17320)
pepcterm_ATPase (TIGR03015), HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), OmpR (COG0745), BaeS (COG0642)