myRT

myRT report for GCA_000730645.1_ASM73064v1

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Seq: BBIU01000038.1 Pseudomonas parafulva NBRC 16636 = DSM 17004 DNA, contig: PPA02S_CON02002, whole genome shotgun sequence (40977 bp)
Overview 1 RT 1: 22644-28384 bp Neighborhood of RT #1 [22644, 28384] DUF4096 NACHT RVT-GII RVT-GII Feature: gene Location: 22644-22985 bp Feature: domain Description: DUF4096 Location: 22668-22839 bp Feature: domain Description: DUF4096 Location: 22668-22839 bp Feature: gene Location: 23301-25151 bp Feature: domain Description: NACHT Location: 23601-24009 bp Feature: domain Description: NACHT Location: 23601 -24009 bp Feature: gene Location: 25797-26288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25815-26148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581 5-261 48 bp Feature: gene Location: 26479-27129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26983-27124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26983-271 24 bp Feature: gene Location: 27249-27485 bp Feature: gene Location: 28112-28384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), NACHT (pfam05729), RVT-GII

Seq: BBIU01000013.1 Pseudomonas parafulva NBRC 16636 = DSM 17004 DNA, contig: PPA02S_CON00801, whole genome shotgun sequence (233916 bp)
Overview 1 RT 1: 29560-36982 bp Neighborhood of RT #1 [29560, 37386] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-UG12 DEXQc_UvrD DEXQc_UvrD UvrD AAA_15 AAA_21 TOPRIM_OLD Feature: gene Location: 29560-31083 bp Feature: domain Description: LZ_Tnp_IS66 Location: 29656-29869 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 9656-2 9869 bp Feature: domain Description: zf-IS66 Location: 29899-30022 bp Feature: domain Description: zf-IS66 Location: 2 9899-3002 2 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30067-30922 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30067-3092 2 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30943-31057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30943-31057 bp Feature: gene Location: 31111-31470 bp Feature: domain Description: TnpB_IS66 Location: 31141-31435 bp Feature: domain Description: TnpB_IS66 Location: 31141-31435 bp Feature: gene Location: 32489-34150 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 32819-33266 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 32 819-332 66 bp Feature: gene Location: 34308-35654 bp Feature: domain Description: DEXQc_UvrD Location: 34323-34515 bp Feature: domain Description: DEXQc_UvrD Location: 3432 3-34515 bp Feature: domain Description: DEXQc_UvrD Location: 34566-34815 bp Feature: domain Description: DEXQc_UvrD Location: 34566-34815 bp Feature: domain Description: UvrD Location: 35469-35616 bp Feature: domain Description: UvrD Location: 35469-35616 bp Feature: gene Location: 35668-37386 bp Feature: domain Description: AAA_15 Location: 35671-35893 bp Feature: domain Description: AAA_15 Location: 35671-35893 bp Feature: domain Description: AAA_21 Location: 36397-36637 bp Feature: domain Description: AAA_2 1 Location: 36397-36637 bp Feature: domain Description: TOPRIM_OLD Location: 36760-36982 bp Feature: domain Description: TOPRIM_OLD Location: 36760-36982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT-UG12, DEXQc_UvrD (cd17932), UvrD (COG0210), AAA_15 (pfam13175), AAA_21 (pfam13304)
TOPRIM_OLD (cd01026)

Seq: BBIU01000011.1 Pseudomonas parafulva NBRC 16636 = DSM 17004 DNA, contig: PPA02S_CON00701, whole genome shotgun sequence (238695 bp)
Overview 1 RT 1: 139868-143212 bp Neighborhood of RT #1 [139868, 143212] Avd_like RVT-DGRs Feature: gene Location: 139868-140440 bp Feature: gene Location: 140493-140846 bp Feature: domain Description: Avd_like Location: 140520-140826 bp Feature: domain Description: Avd_like Location: 140520-140826 bp Feature: gene Location: 140909-142201 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141293-141977 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141293 -141977 bp Feature: gene Location: 142245-142808 bp Feature: gene Location: 142823-143212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs