myRT

myRT report for GCA_000731155.1_PRJEB5509_assembly_1

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Seq: CCDI010000002.1 Halobacillus karajensis WGS project CCDI000000000 data, strain HD-03, contig 000002, whole genome shotgun sequence (626908 bp)
Overview 1 RT 1: 22361-30631 bp 2 RT 2: 44058-54874 bp Neighborhood of RT #1 [22361, 30631] RVT-GII HNHc RimL PRK08298 RVT-GII HNHc Neighborhood of RT #2 [44058, 54879] TraC-F-type Lysozyme_like RVT-GII HNHc RVT-GII HNHc Lysozyme_like RVT-GII Intron_maturas2 HNHc NlpD Feature: gene Location: 22361-22615 bp Feature: gene Location: 22807-23031 bp Feature: gene Location: 23822-25636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24113-24812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 3-2481 2 bp Feature: domain Description: HNHc Note: nucleases Location: 25367-25505 bp Feature: domain Description: HNHc Note: nucleases Location: 25367-25505 bp Feature: gene Location: 25902-26459 bp Feature: domain Description: RimL Location: 25938-26457 bp Feature: domain Description: RimL Location: 25938-26457 bp Feature: gene Location: 26630-27049 bp Feature: domain Description: PRK08298 Location: 26639-27032 bp Feature: domain Description: PRK08298 Location: 26639-27032 bp Feature: gene Location: 27808-29622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28099-28798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28099-28798 bp Feature: domain Description: HNHc Note: nucleases Location: 29353-29491 bp Feature: domain Description: HNHc Note: nucleases Location: 29353-29491 bp Feature: gene Location: 29730-30035 bp Feature: gene Location: 30149-30631 bp Feature: gene Location: 44058-45980 bp Feature: domain Description: TraC-F-type Location: 44766-45894 bp Feature: domain Description: TraC-F-type Location: 44766-45894 bp Feature: gene Location: 45983-46366 bp Feature: domain Description: Lysozyme_like Location: 46184-46331 bp Feature: domain Description: Lysozyme_like Location: 461 84-46331 bp Feature: gene Location: 47010-48815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47304-48000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47304-48000 bp Feature: domain Description: HNHc Note: nucleases Location: 48564-48699 bp Feature: domain Description: HNHc Note: nucleases Location: 48564-48699 bp Feature: gene Location: 49832-51601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50090-50801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50090-50801 bp Feature: domain Description: HNHc Note: nucleases Location: 51365-51500 bp Feature: domain Description: HNHc Note: nucleases Location: 51 365-51 500 bp Feature: gene Location: 51690-51896 bp Feature: domain Description: Lysozyme_like Location: 51720-51888 bp Feature: domain Description: Lysozyme_like Location: 51 720-51 888 bp Feature: gene Location: 52470-54293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52734-53568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52734-53568 bp Feature: domain Description: Intron_maturas2 Location: 53640-53988 bp Feature: domain Description: Intron_maturas2 Location: 53640-53988 bp Feature: domain Description: HNHc Note: nucleases Location: 54114-54267 bp Feature: domain Description: HNHc Note: nucleases Location: 541 1 4-54267 bp Feature: gene Location: 54290-54427 bp Feature: gene Location: 54484-54879 bp Feature: domain Description: NlpD Location: 54514-54874 bp Feature: domain Description: NlpD Location: 5451 4-54874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), RimL (COG1670), PRK08298 (cytidine deaminase; Validated), TraC-F-type (TIGR02746), Lysozyme_like (pfam13702), Intron_maturas2 (pfam01348), NlpD (COG0739)

Seq: CCDI010000001.1 Halobacillus karajensis WGS project CCDI000000000 data, strain HD-03, contig 000001, whole genome shotgun sequence (1773830 bp)
Overview 1 RT 1: 289191-297107 bp 2 RT 2: 675167-679702 bp 3 RT 3: 1340982-1346671 bp Neighborhood of RT #1 [289191, 297107] PucR BCCT RVT-GII HNHc Neighborhood of RT #2 [675167, 679722] RVT-GII HNHc CTP_transf_1 Neighborhood of RT #3 [1340982, 1346671] Nudix_Hydrolase_18 RVT-GII TauE Feature: gene Location: 289191-290882 bp Feature: domain Description: PucR Location: 289371-290865 bp Feature: domain Description: PucR Location: 2 89371-2 90865 bp Feature: gene Location: 291207-292799 bp Feature: domain Description: BCCT Location: 291258-292728 bp Feature: domain Description: BCCT Location: 2 912 58-2 92 72 8 bp Feature: gene Location: 293186-295000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293477-294176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 93477-2 94176 bp Feature: domain Description: HNHc Note: nucleases Location: 294731-294869 bp Feature: domain Description: HNHc Note: nucleases Location: 2 94731-2 94869 bp Feature: gene Location: 295677-295985 bp Feature: gene Location: 296967-297107 bp Feature: gene Location: 675167-675373 bp Feature: gene Location: 675572-675733 bp Feature: gene Location: 675897-677711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676188-676887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676188-676887 bp Feature: domain Description: HNHc Note: nucleases Location: 677442-677580 bp Feature: domain Description: HNHc Note: nucleases Location: 677442 -677580 bp Feature: gene Location: 678511-678864 bp Feature: gene Location: 679087-679722 bp Feature: domain Description: CTP_transf_1 Location: 679156-679702 bp Feature: domain Description: CTP_transf_1 Location: 679156-679702 bp Feature: gene Location: 1340982-1341497 bp Feature: gene Location: 1342155-1342622 bp Feature: domain Description: Nudix_Hydrolase_18 Location: 1342215-1342605 bp Feature: domain Description: Nudix_Hydrolase_18 Location: 1342 2 15-1342 605 bp Feature: gene Location: 1343497-1344591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1343788-1344487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1343788-1344487 bp Feature: gene Location: 1345492-1346379 bp Feature: domain Description: TauE Location: 1345681-1346356 bp Feature: domain Description: TauE Location: 1345681-1346356 bp Feature: gene Location: 1346450-1346671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PucR (pfam07905), BCCT (pfam02028), RVT-GII, HNHc (smart00507), CTP_transf_1 (pfam01148), Nudix_Hydrolase_18 (cd04677), TauE (pfam01925)

Seq: CCDI010000007.1 Halobacillus karajensis WGS project CCDI000000000 data, strain HD-03, contig 000007, whole genome shotgun sequence (76875 bp)
Overview 1 RT 1: 59878-68710 bp Neighborhood of RT #1 [59878, 68710] APH RVT-GII HNHc RVT-GII HNHc Feature: gene Location: 59878-60672 bp Feature: domain Description: APH Location: 60229-60388 bp Feature: domain Description: APH Location: 60229-603 88 bp Feature: gene Location: 60974-61501 bp Feature: gene Location: 61902-63716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62193-62892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62193 -62892 bp Feature: domain Description: HNHc Note: nucleases Location: 63447-63585 bp Feature: domain Description: HNHc Note: nucleases Location: 63 447-63 585 bp Feature: gene Location: 64393-64701 bp Feature: gene Location: 65333-67147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65624-66323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65624-663 23 bp Feature: domain Description: HNHc Note: nucleases Location: 66878-67016 bp Feature: domain Description: HNHc Note: nucleases Location: 66878-67016 bp Feature: gene Location: 67889-68047 bp Feature: gene Location: 68138-68710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), RVT-GII, HNHc (smart00507)

Seq: CCDI010000004.1 Halobacillus karajensis WGS project CCDI000000000 data, strain HD-03, contig 000004, whole genome shotgun sequence (621886 bp)
Overview 1 RT 1: 304608-312020 bp 2 RT 2: 432761-442178 bp 3 RT 3: 597512-603344 bp Neighborhood of RT #1 [304608, 312034] TDT_like_1 CwlT_like RVT-GII HNHc Lysozyme_like RVT-GII Intron_maturas2 HNHc DUF3021 Neighborhood of RT #2 [432761, 442216] PRK13354 RVT-GII HNHc RimL PRK08298 RVT-GII HNHc NT_KNTase_like Caa3_CtaG Neighborhood of RT #3 [597512, 604030] RVT-GII HNHc Nudix_Hydrolase COG4584 Feature: gene Location: 304608-305597 bp Feature: domain Description: TDT_like_1 Location: 304620-305451 bp Feature: domain Description: TDT_like_1 Location: 304 620-3054 51 bp Feature: gene Location: 305685-306122 bp Feature: domain Description: CwlT_like Location: 305859-306105 bp Feature: domain Description: CwlT_like Location: 305859-306105 bp Feature: gene Location: 306896-308665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307154-307865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307154 -307865 bp Feature: domain Description: HNHc Note: nucleases Location: 308429-308564 bp Feature: domain Description: HNHc Note: nucleases Location: 3084 29-308564 bp Feature: gene Location: 308754-308960 bp Feature: domain Description: Lysozyme_like Location: 308784-308952 bp Feature: domain Description: Lysozyme_like Location: 308784 -308952 bp Feature: gene Location: 309534-311357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309798-310632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309798-310632 bp Feature: domain Description: Intron_maturas2 Location: 310704-311052 bp Feature: domain Description: Intron_maturas2 Location: 310704 -311052 bp Feature: domain Description: HNHc Note: nucleases Location: 311178-311331 bp Feature: domain Description: HNHc Note: nucleases Location: 311178-311331 bp Feature: gene Location: 311354-311491 bp Feature: gene Location: 311621-312034 bp Feature: domain Description: DUF3021 Location: 311642-312020 bp Feature: domain Description: DUF3021 Location: 31164 2-312020 bp Feature: gene Location: 432761-432943 bp Feature: gene Location: 432906-434012 bp Feature: domain Description: PRK13354 Location: 432909-434001 bp Feature: domain Description: PRK13354 Location: 4 32909-4 34 001 bp Feature: gene Location: 434720-436534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435011-435710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 35011-4 35710 bp Feature: domain Description: HNHc Note: nucleases Location: 436265-436403 bp Feature: domain Description: HNHc Note: nucleases Location: 4 36265-4 364 03 bp Feature: gene Location: 436800-437357 bp Feature: domain Description: RimL Location: 436836-437355 bp Feature: domain Description: RimL Location: 4 36836-4 37355 bp Feature: gene Location: 437528-437947 bp Feature: domain Description: PRK08298 Location: 437537-437930 bp Feature: domain Description: PRK08298 Location: 4 37537-4 37930 bp Feature: gene Location: 438706-440520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438997-439696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 38997-4 39696 bp Feature: domain Description: HNHc Note: nucleases Location: 440251-440389 bp Feature: domain Description: HNHc Note: nucleases Location: 4 4 0251-4 4 0389 bp Feature: gene Location: 440677-441297 bp Feature: domain Description: NT_KNTase_like Location: 440698-440911 bp Feature: domain Description: NT_KNTase_like Location: 4 4 0698-4 4 0911 bp Feature: gene Location: 441419-442216 bp Feature: domain Description: Caa3_CtaG Location: 441506-442178 bp Feature: domain Description: Caa3_CtaG Location: 4 4 1506-4 4 2178 bp Feature: gene Location: 597512-597835 bp Feature: gene Location: 598141-598482 bp Feature: gene Location: 599515-601329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599806-600505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599806-600505 bp Feature: domain Description: HNHc Note: nucleases Location: 601060-601198 bp Feature: domain Description: HNHc Note: nucleases Location: 601060-601198 bp Feature: gene Location: 601526-601936 bp Feature: domain Description: Nudix_Hydrolase Location: 601547-601871 bp Feature: domain Description: Nudix_Hydrolase Location: 60154 7-601871 bp Feature: gene Location: 602477-604030 bp Feature: domain Description: COG4584 Location: 602486-603344 bp Feature: domain Description: COG4 584 Location: 6024 86-60334 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TDT_like_1 (cd09319), CwlT_like, RVT-GII, HNHc (smart00507), Lysozyme_like (pfam13702), Intron_maturas2 (pfam01348), DUF3021 (pfam11457), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RimL (COG1670), PRK08298 (cytidine deaminase; Validated)
NT_KNTase_like (cd05403), Caa3_CtaG (pfam09678), Nudix_Hydrolase (cl00447), COG4584 (Transposase )

Seq: CCDI010000003.1 Halobacillus karajensis WGS project CCDI000000000 data, strain HD-03, contig 000003, whole genome shotgun sequence (533856 bp)
Overview 1 RT 1: 342291-346962 bp Neighborhood of RT #1 [342291, 346976] GDPD PRK00024 RVT-GII Intron_maturas2 RadC PRK00648 Feature: gene Location: 342291-343121 bp Feature: domain Description: GDPD Location: 342408-343095 bp Feature: domain Description: GDPD Location: 342408-343095 bp Feature: gene Location: 343444-343632 bp Feature: domain Description: PRK00024 Location: 343495-343627 bp Feature: domain Description: PRK00024 Location: 343495 -343627 bp Feature: gene Location: 343818-345248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344076-344784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344076-344784 bp Feature: domain Description: Intron_maturas2 Location: 344949-345141 bp Feature: domain Description: Intron_maturas2 Location: 344949-345 141 bp Feature: gene Location: 345793-346413 bp Feature: domain Description: RadC Location: 345868-346393 bp Feature: domain Description: RadC Location: 345 868-346393 bp Feature: gene Location: 346410-346976 bp Feature: domain Description: PRK00648 Location: 346416-346962 bp Feature: domain Description: PRK00648 Location: 346416-346962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD (pfam03009), PRK00024 (DNA repair protein RadC), RVT-GII, Intron_maturas2 (pfam01348), RadC (pfam04002), PRK00648 (Maf-like protein; Reviewed)