myRT

myRT report for GCA_000731355.1_V1

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Seq: HG977187.1 (562810 bp)
Overview 1 RT 1: 400060-403937 bp Neighborhood of RT #1 [400060, 403942] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 400060-400515 bp Ori: CDU34883.1 Gene: dut Feature: domain Description: dut Location: 400063-400510 bp Feature: domain Description: dut Location: 400063-40051 0 bp Feature: gene Location: 400622-401218 bp Ori: CDU34884.1 Gene: slmA Feature: domain Description: slmA Location: 400628-401204 bp Feature: domain Description: slmA Location: 400628-401 204 bp Feature: gene Location: 401264-402223 bp Ori: CDU34885.1 Gene: reverse transcriptase Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401399-401948 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401 399-401 948 bp Feature: gene Location: 402519-403160 bp Ori: CDU34886.1 Gene: pyrE Feature: domain Description: pyrE Location: 402522-403155 bp Feature: domain Description: pyrE Location: 402522-4031 55 bp Feature: gene Location: 403226-403942 bp Ori: CDU34887.1 Gene: rph Feature: domain Description: rph Location: 403229-403937 bp Feature: domain Description: rph Location: 403229-403937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: HG977190.1 (1962868 bp)
Overview 1 RT 1: 1279870-1286579 bp Neighborhood of RT #1 [1279870, 1286617] HTH_35 Phage_int_SAM_2 Integrase_1 RVT-UG12 PRK10190 cobT Feature: gene Location: 1279870-1280118 bp Ori: CDU36646.1 Feature: domain Description: HTH_35 Location: 1279885-1280101 bp Feature: domain Description: HTH_35 Location: 12 79885-12 80101 bp Feature: gene Location: 1281048-1281932 bp Ori: CDU36647.1 Feature: domain Description: Phage_int_SAM_2 Location: 1281051-1281321 bp Feature: domain Description: Phage_int_SAM_2 Location: 12 81051-12 8132 1 bp Feature: domain Description: Integrase_1 Location: 1281354-1281798 bp Feature: domain Description: Integrase_1 Location: 12 81354-12 81798 bp Feature: gene Location: 1282232-1283788 bp Ori: CDU36648.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1282583-1283018 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12 82 583-12 83018 bp Feature: gene Location: 1284541-1285476 bp Ori: CDU36649.1 Gene: erfK Feature: domain Description: PRK10190 Location: 1284547-1285474 bp Feature: domain Description: PRK10190 Location: 12 84547-12 85474 bp Feature: gene Location: 1285538-1286617 bp Ori: CDU36650.1 Gene: cobT Feature: domain Description: cobT Location: 1285583-1286579 bp Feature: domain Description: cobT Location: 12 85583-12 86579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_35 (pfam13693), Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), RVT-UG12, PRK10190 (L,D-transpeptidase; Provisional), cobT (PRK00105)