myRT

myRT report for GCA_000731955.1_B6

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Seq: JNCK01000001.1 Halomonas zincidurans B6 H_zincidurans_B6_S1, whole genome shotgun sequence (3546937 bp)
Overview 1 RT 1: 632724-639703 bp 2 RT 2: 2012448-2017063 bp 3 RT 3: 2029685-2034657 bp 4 RT 4: 2062802-2068369 bp 5 RT 5: 2092895-2097989 bp 6 RT 6: 2358825-2372864 bp 7 RT 7: 2459373-2463517 bp 8 RT 8: 2605177-2611257 bp 9 RT 9: 2677747-2683406 bp 10 RT 10: 3430110-3437743 bp Neighborhood of RT #1 [632724, 639741] LysR ECM4 RVT-GII GIIM TIGR00276 PRK10565 Neighborhood of RT #2 [2012448, 2017071] SlpA RVT-GII GIIM RVT-GII group_II_RT_mat PRK10757 Neighborhood of RT #3 [2029685, 2034677] GTPase_EngA COG2607 RVT-GII GIIM ModE modA Neighborhood of RT #4 [2062802, 2068380] glcE glcF RVT-GII GIIM Orn PRK12288 Neighborhood of RT #5 [2092895, 2098006] DUF1249 nudF RVT-GII GIIM PRK11776 PRK12378 Neighborhood of RT #6 [2358825, 2372911] DLH PRK09776 PRK09776 COG3943 RVT-GII HTH_1 PBP2_CrgA_like_3 YjgH_like AzlC HTH_XRE AdoMet_MTases RVT-GII GapA PRK09054 Neighborhood of RT #7 [2459373, 2463570] RVT-GII PgsA MFS_NepI_like Neighborhood of RT #8 [2605177, 2611280] PRK11634 YaiI RVT-GII GIIM TPR greB Neighborhood of RT #9 [2677747, 2683411] RhaT COG3547 RVT-GII GIIM M48C_Oma1_like aroE Neighborhood of RT #10 [3430110, 3437763] BenE BenE RVT-GII GIIM DDE_Tnp_1_4 COG4307 Feature: gene Location: 632724-633674 bp Feature: domain Description: LysR Location: 632739-633597 bp Feature: domain Description: LysR Location: 632739-633597 bp Feature: gene Location: 633723-634727 bp Feature: domain Description: ECM4 Location: 633726-634698 bp Feature: domain Description: ECM4 Location: 633726-634698 bp Feature: gene Location: 635342-636676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635696-636320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635696-636320 bp Feature: domain Description: GIIM Note: maturase Location: 636365-636575 bp Feature: domain Description: GIIM Note: maturase Location: 636365-636575 bp Feature: gene Location: 636914-638011 bp Feature: domain Description: TIGR00276 Location: 636968-637976 bp Feature: domain Description: TIGR00276 Location: 636968-637976 bp Feature: gene Location: 638173-639741 bp Feature: domain Description: PRK10565 Location: 638320-639703 bp Feature: domain Description: PRK1 0565 Location: 638320-639703 bp Feature: gene Location: 2012448-2012732 bp Feature: gene Location: 2013033-2013515 bp Feature: domain Description: SlpA Location: 2013036-2013513 bp Feature: domain Description: SlpA Location: 201 3036-201 351 3 bp Feature: gene Location: 2013657-2014739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2013759-2014383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 3759-201 4383 bp Feature: domain Description: GIIM Note: maturase Location: 2014428-2014638 bp Feature: domain Description: GIIM Note: maturase Location: 201 4428-201 4638 bp Feature: gene Location: 2014808-2015458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2014814-2015354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 481 4-201 5354 bp Feature: gene Location: 2015473-2015736 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2015494-2015686 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 201 5494-201 5686 bp Feature: gene Location: 2016277-2017071 bp Feature: domain Description: PRK10757 Location: 2016280-2017063 bp Feature: domain Description: PRK1 0757 Location: 201 6280-201 7063 bp Feature: gene Location: 2029685-2031100 bp Feature: domain Description: GTPase_EngA Location: 2029700-2030996 bp Feature: domain Description: GTPase_EngA Location: 2029700-2030996 bp Feature: gene Location: 2031122-2031982 bp Feature: domain Description: COG2607 Location: 2031134-2031971 bp Feature: domain Description: COG2607 Location: 2031 1 34-2031 971 bp Feature: gene Location: 2032157-2033239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032259-2032883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032259-2032883 bp Feature: domain Description: GIIM Note: maturase Location: 2032928-2033138 bp Feature: domain Description: GIIM Note: maturase Location: 2032928-20331 38 bp Feature: gene Location: 2033359-2033736 bp Feature: domain Description: ModE Location: 2033398-2033707 bp Feature: domain Description: ModE Location: 2033398-2033707 bp Feature: gene Location: 2033838-2034677 bp Feature: domain Description: modA Location: 2033916-2034657 bp Feature: domain Description: modA Location: 203391 6-2034657 bp Feature: gene Location: 2062802-2063974 bp Feature: domain Description: glcE Location: 2062919-2063969 bp Feature: domain Description: glcE Location: 206291 9-2063969 bp Feature: gene Location: 2063976-2065259 bp Feature: domain Description: glcF Location: 2063979-2065218 bp Feature: domain Description: glcF Location: 2063979-206521 8 bp Feature: gene Location: 2065382-2066335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065388-2065973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065388-2065973 bp Feature: domain Description: GIIM Note: maturase Location: 2066024-2066234 bp Feature: domain Description: GIIM Note: maturase Location: 2066024-2066234 bp Feature: gene Location: 2066645-2067229 bp Feature: domain Description: Orn Location: 2066672-2067203 bp Feature: domain Description: Orn Location: 2066672-2067203 bp Feature: gene Location: 2067352-2068380 bp Feature: domain Description: PRK12288 Location: 2067355-2068369 bp Feature: domain Description: PRK1 2288 Location: 2067355-2068369 bp Feature: gene Location: 2092895-2093341 bp Feature: domain Description: DUF1249 Location: 2092964-2093315 bp Feature: domain Description: DUF1 249 Location: 2092964-209331 5 bp Feature: gene Location: 2093345-2093974 bp Feature: domain Description: nudF Location: 2093381-2093966 bp Feature: domain Description: nudF Location: 2093381 -2093966 bp Feature: gene Location: 2094296-2095249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094302-2094887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094302-2094887 bp Feature: domain Description: GIIM Note: maturase Location: 2094938-2095148 bp Feature: domain Description: GIIM Note: maturase Location: 2094938-20951 48 bp Feature: gene Location: 2095652-2097121 bp Feature: domain Description: PRK11776 Location: 2095745-2097113 bp Feature: domain Description: PRK1 1 776 Location: 2095745-20971 1 3 bp Feature: gene Location: 2097278-2098006 bp Feature: domain Description: PRK12378 Location: 2097281-2097989 bp Feature: domain Description: PRK1 2378 Location: 2097281 -2097989 bp Feature: gene Location: 2358825-2359679 bp Feature: domain Description: DLH Location: 2358972-2359671 bp Feature: domain Description: DLH Location: 2358972-2359671 bp Feature: gene Location: 2359688-2361367 bp Feature: domain Description: PRK09776 Location: 2359799-2360066 bp Feature: domain Description: PRK09776 Location: 2359799-2360066 bp Feature: domain Description: PRK09776 Location: 2360168-2361305 bp Feature: domain Description: PRK09776 Location: 23601 68-2361 305 bp Feature: gene Location: 2362270-2363589 bp Feature: domain Description: COG3943 Location: 2362291-2362660 bp Feature: domain Description: COG3943 Location: 2362291 -2362660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2362966-2363587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2362966-2363587 bp Feature: gene Location: 2363692-2364612 bp Feature: domain Description: HTH_1 Location: 2363707-2363878 bp Feature: domain Description: HTH_1 Location: 2363707-2363878 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 2363968-2364571 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 2363968-2364571 bp Feature: gene Location: 2364767-2365171 bp Feature: domain Description: YjgH_like Location: 2364827-2365148 bp Feature: domain Description: YjgH_like Location: 2364827-23651 48 bp Feature: gene Location: 2366234-2366935 bp Feature: domain Description: AzlC Location: 2366240-2366915 bp Feature: domain Description: AzlC Location: 2366240-236691 5 bp Feature: gene Location: 2366932-2368920 bp Feature: domain Description: HTH_XRE Location: 2366959-2367127 bp Feature: domain Description: HTH_XRE Location: 2366959-23671 27 bp Feature: domain Description: AdoMet_MTases Location: 2368129-2368450 bp Feature: domain Description: AdoMet_MTases Location: 23681 29-2368450 bp Feature: gene Location: 2369186-2369533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369189-2369531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23691 89-2369531 bp Feature: gene Location: 2369853-2370857 bp Feature: domain Description: GapA Location: 2369862-2370846 bp Feature: domain Description: GapA Location: 2369862-2370846 bp Feature: gene Location: 2371055-2372911 bp Feature: domain Description: PRK09054 Location: 2371067-2372864 bp Feature: domain Description: PRK09054 Location: 2371 067-2372864 bp Feature: gene Location: 2459373-2459654 bp Feature: gene Location: 2459706-2460047 bp Feature: gene Location: 2460295-2460906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2460451-2460730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2460451 -2460730 bp Feature: gene Location: 2461467-2462135 bp Feature: domain Description: PgsA Location: 2461542-2462064 bp Feature: domain Description: PgsA Location: 2461 542-2462064 bp Feature: gene Location: 2462332-2463570 bp Feature: domain Description: MFS_NepI_like Location: 2462419-2463517 bp Feature: domain Description: MFS_NepI_like Location: 246241 9-246351 7 bp Feature: gene Location: 2605177-2607105 bp Feature: domain Description: PRK11634 Location: 2605420-2607016 bp Feature: domain Description: PRK1 1 634 Location: 2605420-260701 6 bp Feature: gene Location: 2607318-2607770 bp Feature: domain Description: YaiI Location: 2607324-2607762 bp Feature: domain Description: YaiI Location: 2607324-2607762 bp Feature: gene Location: 2607973-2609307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2608327-2608951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2608327-2608951 bp Feature: domain Description: GIIM Note: maturase Location: 2608996-2609206 bp Feature: domain Description: GIIM Note: maturase Location: 2608996-2609206 bp Feature: gene Location: 2609880-2610539 bp Feature: domain Description: TPR Location: 2610120-2610441 bp Feature: domain Description: TPR Location: 261 01 20-261 0441 bp Feature: gene Location: 2610720-2611280 bp Feature: domain Description: greB Location: 2610795-2611257 bp Feature: domain Description: greB Location: 261 0795-261 1 257 bp Feature: gene Location: 2677747-2678841 bp Feature: domain Description: RhaT Location: 2677951-2678773 bp Feature: domain Description: RhaT Location: 2677951 -2678773 bp Feature: gene Location: 2679164-2680201 bp Feature: domain Description: COG3547 Location: 2679182-2680154 bp Feature: domain Description: COG3547 Location: 26791 82-26801 54 bp Feature: gene Location: 2680425-2681378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2680431-2681016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2680431 -2681 01 6 bp Feature: domain Description: GIIM Note: maturase Location: 2681067-2681277 bp Feature: domain Description: GIIM Note: maturase Location: 2681 067-2681 277 bp Feature: gene Location: 2681744-2682577 bp Feature: domain Description: M48C_Oma1_like Location: 2681984-2682515 bp Feature: domain Description: M48C_Oma1 _like Location: 2681 984-268251 5 bp Feature: gene Location: 2682599-2683411 bp Feature: domain Description: aroE Location: 2682605-2683406 bp Feature: domain Description: aroE Location: 2682605-2683406 bp Feature: gene Location: 3430110-3431354 bp Feature: domain Description: BenE Location: 3430176-3431304 bp Feature: domain Description: BenE Location: 34301 76-3431 304 bp Feature: gene Location: 3431451-3432653 bp Feature: domain Description: BenE Location: 3431469-3432597 bp Feature: domain Description: BenE Location: 3431 469-3432597 bp Feature: gene Location: 3433388-3434722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433742-3434366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433742-3434366 bp Feature: domain Description: GIIM Note: maturase Location: 3434411-3434621 bp Feature: domain Description: GIIM Note: maturase Location: 343441 1 -3434621 bp Feature: gene Location: 3435215-3436576 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3435224-3436553 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 3435224-3436553 bp Feature: gene Location: 3436798-3437763 bp Feature: domain Description: COG4307 Location: 3436921-3437743 bp Feature: domain Description: COG4307 Location: 3436921 -3437743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), ECM4 (COG0435), RVT-GII, GIIM (pfam08388), TIGR00276 (epoxyqueuosine reductase), PRK10565 (putative carbohydrate kinase; Provisional), SlpA (COG1047), group_II_RT_mat (TIGR04416), PRK10757 (inositol-1-monophosphatase), GTPase_EngA (TIGR03594)
COG2607 (Predicted ATPase, AAA+ superfamily ), ModE (COG2005), modA (TIGR01256), glcE (PRK11282), glcF (PRK11274), Orn (COG1949), PRK12288 (small ribosomal subunit biogenesis GTPase RsgA), DUF1249 (pfam06853), nudF (PRK10729), PRK11776 (ATP-dependent RNA helicase DbpA; Provisional)
PRK12378 (YebC/PmpR family DNA-binding transcriptional regulator), DLH (pfam01738), PRK09776 (putative diguanylate cyclase; Provisional), COG3943 (Uncharacterized conserved protein ), HTH_1 (pfam00126), PBP2_CrgA_like_3 (cd08472), YjgH_like (cd02198), AzlC (pfam03591), HTH_XRE (smart00530), AdoMet_MTases (cl17173)
GapA (COG0057), PRK09054 (phosphogluconate dehydratase; Validated), PgsA (COG0558), MFS_NepI_like (cd17324), PRK11634 (ATP-dependent RNA helicase DeaD; Provisional), YaiI (COG1671), TPR (smart00028), greB (TIGR01461), RhaT (TIGR00776), COG3547 (Transposase )
M48C_Oma1_like (cd07342), aroE (TIGR00507), BenE (pfam03594), DDE_Tnp_1_4 (pfam13701), COG4307 (Uncharacterized protein, DUF2248 family )

Seq: JNCK01000002.1 Halomonas zincidurans B6 H_zincidurans_B6_S2, whole genome shotgun sequence (7823 bp)
Overview 1 RT 1: 1796-7313 bp Neighborhood of RT #1 [1796, 7357] PRK05479 PRK11716 RVT-GII GIIM LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 1796-2812 bp Feature: domain Description: PRK05479 Location: 1799-2780 bp Feature: domain Description: PRK05479 Location: 1799-2 780 bp Feature: gene Location: 2971-3876 bp Feature: domain Description: PRK11716 Location: 3046-3847 bp Feature: domain Description: PRK11716 Location: 3046-3847 bp Feature: gene Location: 3989-5188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4154-4766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4154-4766 bp Feature: domain Description: GIIM Note: maturase Location: 4826-5042 bp Feature: domain Description: GIIM Note: maturase Location: 482 6-5042 bp Feature: gene Location: 5282-6880 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5432-5645 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5432 -5645 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5837-6701 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5837-6701 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6722-6836 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 672 2 -6836 bp Feature: gene Location: 6989-7357 bp Feature: domain Description: TnpB_IS66 Location: 7031-7313 bp Feature: domain Description: TnpB_IS66 Location: 7031-7313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05479 (ketol-acid reductoisomerase; Provisional), PRK11716 (HTH-type transcriptional activator IlvY), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)