myRT

myRT report for GCA_000732115.1_CeD

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Seq: JPGU01000061.1 Frankia sp. CeD CEDDRAFT_scaffold_60.61, whole genome shotgun sequence (17741 bp)
Overview 1 RT 1: 13498-17489 bp Neighborhood of RT #1 [13498, 17741] RVT-GII DEDD_Tnp_IS110 Feature: gene Location: 13498-13941 bp Feature: gene Location: 14438-14686 bp Feature: gene Location: 15489-16679 bp Ori: KEZ34521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15801-16491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5801 -1 6491 bp Feature: gene Location: 17204-17741 bp Ori: KEZ34522.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 17207-17489 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 7207-1 7489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DEDD_Tnp_IS110 (pfam01548)

Seq: JPGU01000108.1 Frankia sp. CeD CEDDRAFT_scaffold_107.108, whole genome shotgun sequence (2179 bp)
Overview 1 RT 1: 550-2180 bp Neighborhood of RT #1 [550, 2179] DDE_Tnp_1_assoc DDE_Tnp_1 RVT-GII Feature: gene Location: 550-1497 bp Ori: KEZ34203.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 658-919 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 658-919 bp Feature: domain Description: DDE_Tnp_1 Location: 979-1372 bp Feature: domain Description: DDE_Tnp_1 Location: 979-1372 bp Feature: gene Location: 1664-1804 bp Feature: gene Location: 1829-2179 bp Ori: KEZ34205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JPGU01000001.1 Frankia sp. CeD CEDDRAFT_scaffold_0.1, whole genome shotgun sequence (393561 bp)
Overview 1 RT 1: 1-3566 bp Neighborhood of RT #1 [1, 3568] RVT-GII HTH_ARSR PRK07819 PRK07819 Feature: gene Location: 1-371 bp Ori: KEZ38265.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-268 bp Feature: gene Location: 1441-1785 bp Ori: KEZ38266.1 Feature: domain Description: HTH_ARSR Location: 1456-1669 bp Feature: domain Description: HTH_ARSR Location: 1456-1669 bp Feature: gene Location: 1790-3568 bp Ori: KEZ38267.1 Feature: domain Description: PRK07819 Location: 1814-2648 bp Feature: domain Description: PRK07819 Location: 1814-2648 bp Feature: domain Description: PRK07819 Location: 2729-3566 bp Feature: domain Description: PRK07819 Location: 2729-3 566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_ARSR (smart00418), PRK07819 (3-hydroxybutyryl-CoA dehydrogenase; Validated)

Seq: JPGU01000078.1 Frankia sp. CeD CEDDRAFT_scaffold_77.78, whole genome shotgun sequence (6504 bp)
Overview 1 RT 1: 1-2953 bp Neighborhood of RT #1 [1, 2953] RVT-GII HTH_17 HTH_17 Feature: gene Location: 1-734 bp Ori: KEZ34319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-64 3 bp Feature: gene Location: 724-1713 bp Ori: KEZ34320.1 Feature: domain Description: HTH_17 Location: 1264-1375 bp Feature: domain Description: HTH_17 Location: 1264 -1375 bp Feature: domain Description: HTH_17 Location: 1504-1603 bp Feature: domain Description: HTH_17 Location: 1504 -1603 bp Feature: gene Location: 1928-2953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_17 (pfam12728)