myRT

myRT report for GCA_000732325.1_ASM73232v1

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Seq: BBIW01000020.1 Paenibacillus sp. TCA20 DNA, contig: PspTCA2nb20, whole genome shotgun sequence (63008 bp)
Overview 1 RT 1: 25042-36901 bp Neighborhood of RT #1 [25042, 36915] TIGR02687 Lon_rel_chp RVT-UG2 YprA DECH_helic Feature: gene Location: 25042-27564 bp Ori: GAK43182.1 Feature: domain Description: TIGR02687 Location: 25066-27517 bp Feature: domain Description: TIGR02687 Location: 25066-2751 7 bp Feature: gene Location: 27576-29639 bp Ori: GAK43183.1 Feature: domain Description: Lon_rel_chp Location: 27621-29634 bp Feature: domain Description: Lon_rel_chp Location: 27621 -29634 bp Feature: gene Location: 29963-31414 bp Ori: GAK43184.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 30161-30998 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 301 61 -30998 bp Feature: gene Location: 31514-34165 bp Ori: GAK43185.1 Feature: domain Description: YprA Location: 31742-34154 bp Feature: domain Description: YprA Location: 31 742-341 54 bp Feature: gene Location: 34168-36915 bp Ori: GAK43186.1 Feature: domain Description: DECH_helic Location: 34516-36901 bp Feature: domain Description: DECH_helic Location: 3451 6-36901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02687 (TIGR02687 family protein), Lon_rel_chp (TIGR02653), RVT-UG2, YprA (COG1205), DECH_helic (TIGR03817)

Seq: BBIW01000005.1 Paenibacillus sp. TCA20 DNA, contig: PspTCA2nb05, whole genome shotgun sequence (386655 bp)
Overview 1 RT 1: 316543-324126 bp Neighborhood of RT #1 [316543, 324131] UgpE YesM RVT-GII GIIM Big_4 COG3940 YesN GGDEF_2 YesN Feature: gene Location: 316543-317433 bp Ori: GAK40818.1 Feature: domain Description: UgpE Location: 316573-317428 bp Feature: domain Description: UgpE Location: 316573-31742 8 bp Feature: gene Location: 317516-319294 bp Ori: GAK40819.1 Feature: domain Description: YesM Location: 317825-319253 bp Feature: domain Description: YesM Location: 31782 5-3192 53 bp Feature: gene Location: 319424-320824 bp Ori: GAK40820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319736-320363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319736-32 0363 bp Feature: domain Description: GIIM Note: maturase Location: 320420-320648 bp Feature: domain Description: GIIM Note: maturase Location: 32 042 0-32 0648 bp Feature: gene Location: 321325-322485 bp Ori: GAK40821.1 Feature: domain Description: Big_4 Location: 321343-321511 bp Feature: domain Description: Big_4 Location: 32 1343-32 1511 bp Feature: domain Description: COG3940 Location: 321517-322426 bp Feature: domain Description: COG3940 Location: 32 1517-32 2 42 6 bp Feature: gene Location: 322539-324131 bp Ori: GAK40822.1 Feature: domain Description: YesN Location: 322542-322947 bp Feature: domain Description: YesN Location: 32 2 542 -32 2 947 bp Feature: domain Description: GGDEF_2 Location: 323022-323421 bp Feature: domain Description: GGDEF_2 Location: 32 302 2 -32 342 1 bp Feature: domain Description: YesN Location: 323532-324126 bp Feature: domain Description: YesN Location: 32 3532 -32 412 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), YesM (COG2972), RVT-GII, GIIM (pfam08388), Big_4 (pfam07532), COG3940 (Beta-xylosidase, GH43 family ), YesN (COG4753), GGDEF_2 (pfam17853)