myRT

myRT report for GCA_000733315.1_ASM73331v1

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Seq: JPJA01000105.1 Vibrio sp. ER1A plasmid unnamed 2 Joined_contig_30, whole genome shotgun sequence (8783 bp)
Overview 1 RT 1: 207-3825 bp Neighborhood of RT #1 [207, 3905] Avd_like RVT-DGRs Big_2 Big_2 DUF1566 Feature: gene Location: 207-575 bp Ori: KFA94904.1 Feature: domain Description: Avd_like Location: 213-516 bp Feature: domain Description: Avd_like Location: 21 3-51 6 bp Feature: gene Location: 603-1907 bp Ori: KFA94905.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 810-1512 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81 0-1 51 2 bp Feature: gene Location: 2095-2352 bp Feature: gene Location: 2817-3905 bp Ori: KFA94907.1 Feature: domain Description: Big_2 Location: 2976-3186 bp Feature: domain Description: Big_2 Location: 2976-31 86 bp Feature: domain Description: Big_2 Location: 3216-3432 bp Feature: domain Description: Big_2 Location: 321 6-3432 bp Feature: domain Description: DUF1566 Location: 3627-3825 bp Feature: domain Description: DUF1 566 Location: 3627-3825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Big_2 (pfam02368), DUF1566 (pfam07603)

Seq: JPJA01000086.1 Vibrio sp. ER1A Joined_contig_3, whole genome shotgun sequence (1789809 bp)
Overview 1 RT 1: 1456709-1469098 bp Neighborhood of RT #1 [1456709, 1469118] GH4_GlvA_pagL_like PTS-IIBC-alpha RVT-UG1 DUF4145 HsdR RMtype1_S_EcoJA69PI-TRD1-CR1_like RMtype1_S_EcoJA69PI-TRD1-CR1_like Feature: gene Location: 1456709-1458037 bp Ori: KFA98430.1 Feature: domain Description: GH4_GlvA_pagL_like Location: 1456724-1458029 bp Feature: domain Description: GH4_GlvA_pagL_like Location: 145672 4-145802 9 bp Feature: gene Location: 1458095-1459648 bp Ori: KFA98431.1 Feature: domain Description: PTS-IIBC-alpha Location: 1458107-1459640 bp Feature: domain Description: PTS-IIBC-alpha Location: 1458107-1459640 bp Feature: gene Location: 1460354-1464202 bp Ori: KFA98432.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1461020-1461542 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 146102 0-1461542 bp Feature: gene Location: 1464272-1467904 bp Ori: KFA98433.1 Feature: domain Description: DUF4145 Location: 1464416-1464695 bp Feature: domain Description: DUF4145 Location: 1464416-1464695 bp Feature: domain Description: HsdR Location: 1464992-1467827 bp Feature: domain Description: HsdR Location: 1464992 -146782 7 bp Feature: gene Location: 1467940-1469118 bp Ori: KFA98434.1 Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 1467949-1468507 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 1467949-1468507 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 1468756-1469098 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 1468756-1469098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH4_GlvA_pagL_like (cd05298), PTS-IIBC-alpha (TIGR02005), RVT-UG1, DUF4145 (pfam13643), HsdR (COG4096), RMtype1_S_EcoJA69PI-TRD1-CR1_like (cd17273)

Seq: JPJA01000099.1 Vibrio sp. ER1A Joined_contig_24, whole genome shotgun sequence (22647 bp)
Overview 1 RT 1: 16682-22311 bp Neighborhood of RT #1 [16682, 22535] FAD_oxidored RVT_N RVT-GII GIIM Feature: gene Location: 16682-18955 bp Ori: KFA94998.1 Feature: domain Description: FAD_oxidored Location: 16742-17981 bp Feature: domain Description: FAD_oxidored Location: 16742-17981 bp Feature: gene Location: 19574-20362 bp Feature: gene Location: 21063-22535 bp Ori: KFA95000.1 Feature: domain Description: RVT_N Location: 21111-21354 bp Feature: domain Description: RVT_N Location: 21111-213 54 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21399-22026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213 99-22026 bp Feature: domain Description: GIIM Note: maturase Location: 22086-22311 bp Feature: domain Description: GIIM Note: maturase Location: 22086-223 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FAD_oxidored (pfam12831), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)