myRT

myRT report for GCA_000733325.1_ASM73332v1

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Seq: JPHT01000015.1 Frankia sp. Allo2 ALLO2DRAFT_scaffold_14.15, whole genome shotgun sequence (107391 bp)
Overview 1 RT 1: 2387-9313 bp Neighborhood of RT #1 [2387, 9414] MFS_LmrB_MDR_like RVT-GII PinE Zn_ribbon_recom HTH_17 excise HTH_17 KAS_III Feature: gene Location: 2387-3862 bp Ori: KFB04601.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 2474-3794 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 2474-3794 bp Feature: gene Location: 3849-4001 bp Feature: gene Location: 4514-4726 bp Ori: KFB04603.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4673-4721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4673-4721 bp Feature: gene Location: 5141-7630 bp Ori: KFB04604.1 Feature: domain Description: PinE Location: 5189-5780 bp Feature: domain Description: PinE Location: 51 89-5780 bp Feature: domain Description: Zn_ribbon_recom Location: 6128-6293 bp Feature: domain Description: Zn_ribbon_recom Location: 61 28-6293 bp Feature: domain Description: HTH_17 Location: 6986-7097 bp Feature: domain Description: HTH_1 7 Location: 6986-7097 bp Feature: domain Description: excise Location: 7202-7289 bp Feature: domain Description: excise Location: 7202-7289 bp Feature: domain Description: HTH_17 Location: 7430-7529 bp Feature: domain Description: HTH_1 7 Location: 7430-7529 bp Feature: gene Location: 8338-9414 bp Ori: KFB04605.1 Feature: domain Description: KAS_III Location: 8356-9313 bp Feature: domain Description: KAS_III Location: 8356-931 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_LmrB_MDR_like (cd17503), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), excise (TIGR01764), KAS_III (cd00830)

Seq: JPHT01000008.1 Frankia sp. Allo2 ALLO2DRAFT_scaffold_7.8, whole genome shotgun sequence (177238 bp)
Overview 1 RT 1: 160464-166259 bp Neighborhood of RT #1 [160464, 166267] PRK07819 PRK07819 HTH_ARSR RVT-GII GIIM FldA Methyltransf_19 Feature: gene Location: 160464-162191 bp Ori: KFB05540.1 Feature: domain Description: PRK07819 Location: 160467-161271 bp Feature: domain Description: PRK07819 Location: 160467-1612 71 bp Feature: domain Description: PRK07819 Location: 161352-162189 bp Feature: domain Description: PRK07819 Location: 161352 -162 189 bp Feature: gene Location: 162248-162592 bp Ori: KFB05541.1 Feature: domain Description: HTH_ARSR Location: 162263-162476 bp Feature: domain Description: HTH_ARSR Location: 162 2 63-162 476 bp Feature: gene Location: 163662-164309 bp Ori: KFB05542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163665-163929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163665-16392 9 bp Feature: domain Description: GIIM Note: maturase Location: 164010-164214 bp Feature: domain Description: GIIM Note: maturase Location: 164010-1642 14 bp Feature: gene Location: 164394-164948 bp Ori: KFB05543.1 Feature: domain Description: FldA Location: 164397-164577 bp Feature: domain Description: FldA Location: 164397-164577 bp Feature: gene Location: 165443-166267 bp Ori: KFB05544.1 Feature: domain Description: Methyltransf_19 Location: 165476-166259 bp Feature: domain Description: Methyltransf_19 Location: 165476-1662 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07819 (3-hydroxybutyryl-CoA dehydrogenase; Validated), HTH_ARSR (smart00418), RVT-GII, GIIM (pfam08388), FldA (COG0716), Methyltransf_19 (pfam04672)

Seq: JPHT01000018.1 Frankia sp. Allo2 ALLO2DRAFT_scaffold_17.18, whole genome shotgun sequence (96869 bp)
Overview 1 RT 1: 1937-8442 bp Neighborhood of RT #1 [1937, 8442] KOG0776 RVT_N RVT-GII GIIM Feature: gene Location: 1937-2422 bp Ori: KFB04349.1 Feature: domain Description: KOG0776 Location: 1955-2390 bp Feature: domain Description: KOG0776 Location: 1955-23 90 bp Feature: gene Location: 2803-3591 bp Feature: gene Location: 3691-5529 bp Ori: KFB04351.1 Feature: domain Description: RVT_N Location: 3823-4063 bp Feature: domain Description: RVT_N Location: 3 823 -4063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4120-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4120-4765 bp Feature: domain Description: GIIM Note: maturase Location: 4834-5062 bp Feature: domain Description: GIIM Note: maturase Location: 483 4-5062 bp Feature: gene Location: 6458-7306 bp Feature: gene Location: 7717-8442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0776 (KOG0776, Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JPHT01000027.1 Frankia sp. Allo2 ALLO2DRAFT_scaffold_26.27, whole genome shotgun sequence (65760 bp)
Overview 1 RT 1: 27439-32916 bp Neighborhood of RT #1 [27439, 32916] KOG2565 PIN_MtVapC27-VapC40_like RVT-GII GIIM Feature: gene Location: 27439-28698 bp Ori: KFB03714.1 Feature: domain Description: KOG2565 Location: 27496-28672 bp Feature: domain Description: KOG2565 Location: 274 96-28672 bp Feature: gene Location: 28886-29098 bp Ori: KFB03715.1 Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 28961-29081 bp Feature: domain Description: PIN_MtVapC27-VapC4 0_like Location: 28961-29081 bp Feature: gene Location: 29267-30643 bp Ori: KFB03716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29582-30212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29582-30212 bp Feature: domain Description: GIIM Note: maturase Location: 30299-30503 bp Feature: domain Description: GIIM Note: maturase Location: 30299-30503 bp Feature: gene Location: 31412-32533 bp Feature: gene Location: 32542-32916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), PIN_MtVapC27-VapC40_like (cd18681), RVT-GII, GIIM (pfam08388)

Seq: JPHT01000107.1 Frankia sp. Allo2 ALLO2DRAFT_scaffold_106.107, whole genome shotgun sequence (1588 bp)
Overview 1 RT 1: 256-1258 bp Neighborhood of RT #1 [256, 1446] RVT-GII Feature: gene Location: 256-1446 bp Ori: KFB00348.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 68-125 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JPHT01000096.1 Frankia sp. Allo2 ALLO2DRAFT_scaffold_95.96, whole genome shotgun sequence (2310 bp)
Overview 1 RT 1: 198-1708 bp Neighborhood of RT #1 [198, 1713] RVT-GII GIIM COG3464 Feature: gene Location: 198-788 bp Ori: KFB01040.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-339 bp Feature: domain Description: GIIM Note: maturase Location: 408-633 bp Feature: domain Description: GIIM Note: maturase Location: 408-6 33 bp Feature: gene Location: 805-1167 bp Feature: gene Location: 1402-1713 bp Ori: KFB01042.1 Feature: domain Description: COG3464 Location: 1486-1708 bp Feature: domain Description: COG346 4 Location: 1486 -1708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3464 (Transposase )