myRT

myRT report for GCA_000733775.1_ASM73377v1

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Seq: JPOE01000002.1 Thiomonas sp. FB-Cd CD04DRAFT_scf7180000000012_quiver_quiver.2_C, whole genome shotgun sequence (2781477 bp)
Overview 1 RT 1: 1270526-1277170 bp 2 RT 2: 1613862-1620533 bp 3 RT 3: 2511121-2516696 bp Neighborhood of RT #1 [1270526, 1277205] PRC SPFH_eoslipins_u1 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #2 [1613862, 1620589] AAA AAA RVT-GII GIIM Dcm Neighborhood of RT #3 [2511121, 2516696] DDE_Tnp_IS66 COG5421 COG5421 RVT-GII GIIM Feature: gene Location: 1270526-1270972 bp Feature: domain Description: PRC Location: 1270628-1270850 bp Feature: domain Description: PRC Location: 1 270628-1 270850 bp Feature: gene Location: 1271501-1273597 bp Feature: domain Description: SPFH_eoslipins_u1 Location: 1271651-1272182 bp Feature: domain Description: SPFH_eoslipins_u1 Location: 1 271 651 -1 2721 82 bp Feature: gene Location: 1273660-1275114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274080-1274692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274080-1 274692 bp Feature: domain Description: GIIM Note: maturase Location: 1274752-1274956 bp Feature: domain Description: GIIM Note: maturase Location: 1 274752-1 274956 bp Feature: gene Location: 1275257-1276795 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1275386-1275596 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 275386-1 275596 bp Feature: domain Description: zf-IS66 Location: 1275623-1275743 bp Feature: domain Description: zf-IS66 Location: 1 275623-1 275743 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1275788-1276625 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 275788-1 276625 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1276646-1276757 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 276646-1 276757 bp Feature: gene Location: 1276864-1277205 bp Feature: domain Description: TnpB_IS66 Location: 1276882-1277170 bp Feature: domain Description: TnpB_IS66 Location: 1 276882-1 2771 70 bp Feature: gene Location: 1613862-1616426 bp Feature: domain Description: AAA Location: 1615074-1615467 bp Feature: domain Description: AAA Location: 1 61 5074-1 61 5467 bp Feature: domain Description: AAA Location: 1615815-1616181 bp Feature: domain Description: AAA Location: 1 61 581 5-1 61 61 81 bp Feature: gene Location: 1617176-1617643 bp Feature: gene Location: 1617771-1618466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617792-1617960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 7792-1 61 7960 bp Feature: domain Description: GIIM Note: maturase Location: 1618011-1618245 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 801 1 -1 61 8245 bp Feature: gene Location: 1618537-1618911 bp Feature: gene Location: 1618937-1620589 bp Feature: domain Description: Dcm Location: 1619030-1620533 bp Feature: domain Description: Dcm Location: 1 61 9030-1 620533 bp Feature: gene Location: 2511121-2512677 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2511766-2512603 bp Feature: domain Description: DDE_Tnp_IS66 Location: 251 1 766-251 2603 bp Feature: gene Location: 2512828-2514531 bp Feature: domain Description: COG5421 Location: 2513455-2513671 bp Feature: domain Description: COG5421 Location: 251 3455-251 3671 bp Feature: domain Description: COG5421 Location: 2514151-2514355 bp Feature: domain Description: COG5421 Location: 251 41 51 -251 4355 bp Feature: gene Location: 2514862-2516193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2515153-2515816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 51 53-251 581 6 bp Feature: domain Description: GIIM Note: maturase Location: 2515897-2516104 bp Feature: domain Description: GIIM Note: maturase Location: 251 5897-251 61 04 bp Feature: gene Location: 2516204-2516497 bp Feature: gene Location: 2516544-2516696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRC (pfam05239), SPFH_eoslipins_u1 (cd08826), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), AAA (TIGR00769)
Dcm (COG0270), COG5421 (Transposase )