myRT

myRT report for GCA_000733835.1_ASM73383v1

Download annotations/find similar RTs

Seq: JPOH01000001.1 Methylobacter tundripaludum 31/32 T449DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence (5034627 bp)
Overview 1 RT 1: 485892-489245 bp 2 RT 2: 832868-837996 bp 3 RT 3: 2130407-2134461 bp 4 RT 4: 3379521-3385288 bp Neighborhood of RT #1 [485892, 489283] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [832868, 837996] bet_lambda phage_rel_nuc RVT_N RVT-GII GIIM HNHc phage_rel_nuc Neighborhood of RT #3 [2130407, 2134469] hisH RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [3379521, 3385599] PIN_Pae0151-like RVT-UG28 CusA EstA Feature: gene Location: 485892-486188 bp Feature: gene Location: 486331-486498 bp Feature: gene Location: 486592-488730 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 486805-487408 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 486805-487408 bp Feature: domain Description: Cas1_I-II-III Location: 487732-488695 bp Feature: domain Description: Cas1 _I-II-III Location: 487732-488695 bp Feature: gene Location: 488865-489005 bp Feature: gene Location: 489017-489283 bp Feature: domain Description: Cas2_I_II_III Location: 489023-489245 bp Feature: domain Description: Cas2_I_II_III Location: 489023-489245 bp Feature: gene Location: 832868-833842 bp Feature: domain Description: bet_lambda Location: 832934-833456 bp Feature: domain Description: bet_lambda Location: 832934-833456 bp Feature: gene Location: 834105-834266 bp Feature: domain Description: phage_rel_nuc Location: 834153-834255 bp Feature: domain Description: phage_rel_nuc Location: 8341 53-834255 bp Feature: gene Location: 834883-836598 bp Feature: domain Description: RVT_N Location: 834946-835189 bp Feature: domain Description: RVT_N Location: 834946-8351 89 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835234-835894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835234-835894 bp Feature: domain Description: GIIM Note: maturase Location: 835945-836179 bp Feature: domain Description: GIIM Note: maturase Location: 835945-8361 79 bp Feature: domain Description: HNHc Note: nucleases Location: 836398-836551 bp Feature: domain Description: HNHc Note: nucleases Location: 836398-836551 bp Feature: gene Location: 836863-837561 bp Feature: domain Description: phage_rel_nuc Location: 836875-837037 bp Feature: domain Description: phage_rel_nuc Location: 836875-837037 bp Feature: gene Location: 837655-837996 bp Feature: gene Location: 2130407-2130721 bp Feature: gene Location: 2130945-2131610 bp Feature: domain Description: hisH Location: 2130948-2131599 bp Feature: domain Description: hisH Location: 21 30948-21 31 599 bp Feature: gene Location: 2131906-2133147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132104-2132761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 321 04-21 32761 bp Feature: domain Description: GIIM Note: maturase Location: 2132842-2133064 bp Feature: domain Description: GIIM Note: maturase Location: 21 32842-21 33064 bp Feature: gene Location: 2133289-2134176 bp Feature: domain Description: PHA02517 Location: 2133358-2134135 bp Feature: domain Description: PHA0251 7 Location: 21 33358-21 341 35 bp Feature: gene Location: 2134173-2134469 bp Feature: domain Description: InsE Location: 2134182-2134461 bp Feature: domain Description: InsE Location: 21 341 82-21 34461 bp Feature: gene Location: 3379521-3379721 bp Feature: domain Description: PIN_Pae0151-like Location: 3379530-3379686 bp Feature: domain Description: PIN_Pae01 51 -like Location: 3379530-3379686 bp Feature: gene Location: 3379817-3379948 bp Feature: gene Location: 3380187-3381680 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 3380472-3381105 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 3380472-3381 1 05 bp Feature: gene Location: 3381855-3384953 bp Feature: domain Description: CusA Location: 3381858-3384930 bp Feature: domain Description: CusA Location: 3381 858-3384930 bp Feature: gene Location: 3384916-3385599 bp Feature: domain Description: EstA Location: 3384952-3385288 bp Feature: domain Description: EstA Location: 3384952-3385288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), bet_lambda (TIGR01913), phage_rel_nuc (TIGR03033), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), hisH (PRK14004)
PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PIN_Pae0151-like (cd09873), RVT-UG28, CusA (COG3696), EstA (COG1075)