myRT

myRT report for GCA_000733925.1_ASM73392v1

Download annotations/find similar RTs

Seq: JPOO01000001.1 Arenibacter algicola strain TG409 U735DRAFT_scf7180000000010_quiver.1_C, whole genome shotgun sequence (2349894 bp)
Overview 1 RT 1: 1430872-1435960 bp 2 RT 2: 2134309-2140224 bp 3 RT 3: 2319249-2323435 bp Neighborhood of RT #1 [1430872, 1435960] HTH_XRE RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #2 [2134309, 2140403] RVT-GII GIIM RVT-GII GIIM YfdV Neighborhood of RT #3 [2319249, 2323488] UPF0158 RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 1430872-1431189 bp Feature: gene Location: 1431361-1431771 bp Feature: domain Description: HTH_XRE Location: 1431394-1431559 bp Feature: domain Description: HTH_XRE Location: 1 431 394-1 431 559 bp Feature: gene Location: 1432662-1434017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432968-1433628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 432968-1 433628 bp Feature: domain Description: GIIM Note: maturase Location: 1433712-1433928 bp Feature: domain Description: GIIM Note: maturase Location: 1 43371 2-1 433928 bp Feature: gene Location: 1434047-1434679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1434116-1434299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4341 1 6-1 434299 bp Feature: domain Description: GIIM Note: maturase Location: 1434392-1434599 bp Feature: domain Description: GIIM Note: maturase Location: 1 434392-1 434599 bp Feature: gene Location: 1434879-1435661 bp Feature: gene Location: 1435796-1435960 bp Feature: gene Location: 2134309-2134497 bp Feature: gene Location: 2134702-2134839 bp Feature: gene Location: 2134897-2136303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2135236-2135854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 35236-21 35854 bp Feature: domain Description: GIIM Note: maturase Location: 2135905-2136124 bp Feature: domain Description: GIIM Note: maturase Location: 21 35905-21 361 24 bp Feature: gene Location: 2136600-2136737 bp Feature: gene Location: 2136795-2138201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2137134-2137752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 371 34-21 37752 bp Feature: domain Description: GIIM Note: maturase Location: 2137803-2138022 bp Feature: domain Description: GIIM Note: maturase Location: 21 37803-21 38022 bp Feature: gene Location: 2138803-2139159 bp Feature: gene Location: 2139252-2140403 bp Feature: domain Description: YfdV Location: 2139261-2140224 bp Feature: domain Description: YfdV Location: 21 39261 -21 40224 bp Feature: gene Location: 2319249-2319617 bp Feature: gene Location: 2319799-2320215 bp Feature: domain Description: UPF0158 Location: 2319940-2320171 bp Feature: domain Description: UPF01 58 Location: 231 9940-23201 71 bp Feature: gene Location: 2321261-2322358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321456-2322071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321 456-2322071 bp Feature: domain Description: GIIM Note: maturase Location: 2322143-2322326 bp Feature: domain Description: GIIM Note: maturase Location: 23221 43-2322326 bp Feature: gene Location: 2322461-2322667 bp Feature: gene Location: 2323222-2323488 bp Feature: domain Description: HTH_Tnp_1 Location: 2323228-2323435 bp Feature: domain Description: HTH_Tnp_1 Location: 2323228-2323435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), YfdV (COG0679), UPF0158 (pfam03682), HTH_Tnp_1 (pfam01527)

Seq: JPOO01000003.1 Arenibacter algicola strain TG409 U735DRAFT_scf7180000000011_quiver.3_C, whole genome shotgun sequence (3191249 bp)
Overview 1 RT 1: 2355346-2360441 bp Neighborhood of RT #1 [2355346, 2361565] couple_hipB RVT-GII GIIM DUF4263 PIN_VapC_like Feature: gene Location: 2355346-2355555 bp Feature: domain Description: couple_hipB Location: 2355352-2355523 bp Feature: domain Description: couple_hipB Location: 2 355352 -2 35552 3 bp Feature: gene Location: 2356091-2356831 bp Feature: gene Location: 2356873-2358189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2357068-2357683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 357068-2 357683 bp Feature: domain Description: GIIM Note: maturase Location: 2357755-2357968 bp Feature: domain Description: GIIM Note: maturase Location: 2 357755-2 357968 bp Feature: gene Location: 2358835-2359938 bp Feature: domain Description: DUF4263 Location: 2359435-2359855 bp Feature: domain Description: DUF42 63 Location: 2 359435-2 359855 bp Feature: gene Location: 2360045-2361565 bp Feature: domain Description: PIN_VapC_like Location: 2360057-2360441 bp Feature: domain Description: PIN_VapC_like Location: 2 360057-2 360441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), RVT-GII, GIIM (pfam08388), DUF4263 (pfam14082), PIN_VapC_like (cd18702)