myRT

myRT report for GCA_000733935.1_ASM73393v1

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Seq: JPON01000001.1 Methylomarinum vadi strain IT-4 EP25DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence (4335162 bp)
Overview 1 RT 1: 1178112-1186149 bp 2 RT 2: 1772776-1775538 bp 3 RT 3: 3666630-3671030 bp 4 RT 4: 3694202-3700333 bp 5 RT 5: 3722005-3725419 bp Neighborhood of RT #1 [1178112, 1186166] RAYT Dimer_Tnp_Tn5 RVT-GII GIIM Tnp_DNA_bind NMT1 PRK09776 GAF_2 PRK10060 Neighborhood of RT #2 [1772776, 1775538] DDE_Tnp_1 RVT-GII Neighborhood of RT #3 [3666630, 3671317] SpoIIAA-like RVT-GII GIIM Peptidase_M23_N NlpD xseA Neighborhood of RT #4 [3694202, 3700419] PMT_2 Tnp_DNA_bind RVT-GII GIIM Dimer_Tnp_Tn5 PEP_O_lig_1 Neighborhood of RT #5 [3722005, 3725439] Tnp_DNA_bind DDE_Tnp_1 RVT-GII GIIM Dimer_Tnp_Tn5 DDE_5 Feature: gene Location: 1178112-1178426 bp Feature: domain Description: RAYT Location: 1178118-1178421 bp Feature: domain Description: RAYT Location: 1 1 781 1 8-1 1 78421 bp Feature: gene Location: 1178930-1179376 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1179092-1179374 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1 1 79092-1 1 79374 bp Feature: gene Location: 1179387-1180637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1179591-1180248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 79591 -1 1 80248 bp Feature: domain Description: GIIM Note: maturase Location: 1180329-1180551 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 80329-1 1 80551 bp Feature: gene Location: 1181165-1182160 bp Feature: domain Description: Tnp_DNA_bind Location: 1181198-1181366 bp Feature: domain Description: Tnp_DNA_bind Location: 1 1 81 1 98-1 1 81 366 bp Feature: gene Location: 1182414-1186166 bp Feature: domain Description: NMT1 Location: 1182603-1183224 bp Feature: domain Description: NMT1 Location: 1 1 82603-1 1 83224 bp Feature: domain Description: PRK09776 Location: 1183545-1183962 bp Feature: domain Description: PRK09776 Location: 1 1 83545-1 1 83962 bp Feature: domain Description: GAF_2 Location: 1184016-1184448 bp Feature: domain Description: GAF_2 Location: 1 1 8401 6-1 1 84448 bp Feature: domain Description: PRK10060 Location: 1184463-1186149 bp Feature: domain Description: PRK1 0060 Location: 1 1 84463-1 1 861 49 bp Feature: gene Location: 1772776-1773042 bp Feature: domain Description: DDE_Tnp_1 Location: 1772851-1772971 bp Feature: domain Description: DDE_Tnp_1 Location: 1 772851 -1 772971 bp Feature: gene Location: 1773142-1773414 bp Feature: gene Location: 1773630-1774346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773834-1774320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 773834-1 774320 bp Feature: gene Location: 1774544-1774771 bp Feature: gene Location: 1775362-1775538 bp Feature: gene Location: 3666630-3666995 bp Feature: domain Description: SpoIIAA-like Location: 3666666-3666984 bp Feature: domain Description: SpoIIAA-like Location: 3666666-3666984 bp Feature: gene Location: 3667221-3667415 bp Feature: gene Location: 3667560-3668894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3667848-3668508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3667848-3668508 bp Feature: domain Description: GIIM Note: maturase Location: 3668580-3668793 bp Feature: domain Description: GIIM Note: maturase Location: 3668580-3668793 bp Feature: gene Location: 3669121-3669966 bp Feature: domain Description: Peptidase_M23_N Location: 3669196-3669409 bp Feature: domain Description: Peptidase_M23_N Location: 36691 96-3669409 bp Feature: domain Description: NlpD Location: 3669541-3669928 bp Feature: domain Description: NlpD Location: 3669541 -3669928 bp Feature: gene Location: 3669956-3671317 bp Feature: domain Description: xseA Location: 3669998-3671030 bp Feature: domain Description: xseA Location: 3669998-3671 030 bp Feature: gene Location: 3694202-3695764 bp Feature: domain Description: PMT_2 Location: 3694448-3694913 bp Feature: domain Description: PMT_2 Location: 3694448-369491 3 bp Feature: gene Location: 3695825-3696820 bp Feature: domain Description: Tnp_DNA_bind Location: 3695858-3696026 bp Feature: domain Description: Tnp_DNA_bind Location: 3695858-3696026 bp Feature: gene Location: 3697348-3698598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3697552-3698209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3697552-3698209 bp Feature: domain Description: GIIM Note: maturase Location: 3698290-3698512 bp Feature: domain Description: GIIM Note: maturase Location: 3698290-369851 2 bp Feature: gene Location: 3698609-3699055 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3698771-3699053 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3698771 -3699053 bp Feature: gene Location: 3699154-3700419 bp Feature: domain Description: PEP_O_lig_1 Location: 3699160-3700333 bp Feature: domain Description: PEP_O_lig_1 Location: 36991 60-3700333 bp Feature: gene Location: 3722005-3722217 bp Feature: domain Description: Tnp_DNA_bind Location: 3722014-3722182 bp Feature: domain Description: Tnp_DNA_bind Location: 372201 4-37221 82 bp Feature: gene Location: 3722235-3722981 bp Feature: domain Description: DDE_Tnp_1 Location: 3722535-3722955 bp Feature: domain Description: DDE_Tnp_1 Location: 3722535-3722955 bp Feature: gene Location: 3723509-3724759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3723713-3724370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372371 3-3724370 bp Feature: domain Description: GIIM Note: maturase Location: 3724451-3724673 bp Feature: domain Description: GIIM Note: maturase Location: 3724451 -3724673 bp Feature: gene Location: 3724770-3725216 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3724932-3725214 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3724932-372521 4 bp Feature: gene Location: 3725275-3725439 bp Feature: domain Description: DDE_5 Location: 3725287-3725419 bp Feature: domain Description: DDE_5 Location: 3725287-372541 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), Dimer_Tnp_Tn5 (pfam02281), RVT-GII, GIIM (pfam08388), Tnp_DNA_bind (pfam14706), NMT1 (pfam09084), PRK09776 (putative diguanylate cyclase; Provisional), GAF_2 (pfam13185), PRK10060 (cyclic di-GMP phosphodiesterase), DDE_Tnp_1 (pfam01609)
SpoIIAA-like (pfam11964), Peptidase_M23_N (pfam18421), NlpD (COG0739), xseA (TIGR00237), PMT_2 (pfam13231), PEP_O_lig_1 (TIGR03097), DDE_5 (pfam13546)