myRT

myRT report for GCA_000736435.1_ASM73643v1

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Seq: CP008949.1 Rhodococcus opacus strain R7 plasmid pPDG2 sequence (426388 bp)
Overview 1 RT 1: 282592-288075 bp 2 RT 2: 299606-307417 bp Neighborhood of RT #1 [282592, 288075] DUF4096 RVT-GII Intron_maturas2 HNHc TauC Neighborhood of RT #2 [299606, 307479] YcaC_related SsuD RVT-GII Intron_maturas2 HNHc AcrR fabG Feature: gene Location: 282592-282951 bp Ori: AII10958.1 Feature: domain Description: DUF4096 Location: 282625-282853 bp Feature: domain Description: DUF4096 Location: 282625-282853 bp Feature: gene Location: 283816-285597 bp Ori: AII10959.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284077-284872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284077-284872 bp Feature: domain Description: Intron_maturas2 Location: 284986-285202 bp Feature: domain Description: Intron_maturas2 Location: 284986-285202 bp Feature: domain Description: HNHc Note: nucleases Location: 285397-285553 bp Feature: domain Description: HNHc Note: nucleases Location: 285397-285553 bp Feature: gene Location: 286404-287306 bp Ori: AII10960.1 Feature: domain Description: TauC Location: 286551-287295 bp Feature: domain Description: TauC Location: 286551 -287295 bp Feature: gene Location: 287752-288075 bp Feature: gene Location: 299606-300238 bp Ori: AII10969.1 Feature: domain Description: YcaC_related Location: 299642-300119 bp Feature: domain Description: YcaC_related Location: 299642-3001 1 9 bp Feature: gene Location: 300351-301364 bp Ori: AII10970.1 Feature: domain Description: SsuD Location: 300423-301323 bp Feature: domain Description: SsuD Location: 300423-301 323 bp Feature: gene Location: 302698-304479 bp Ori: AII10971.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302959-303754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302959-303754 bp Feature: domain Description: Intron_maturas2 Location: 303868-304084 bp Feature: domain Description: Intron_maturas2 Location: 303868-304084 bp Feature: domain Description: HNHc Note: nucleases Location: 304279-304435 bp Feature: domain Description: HNHc Note: nucleases Location: 304279-304435 bp Feature: gene Location: 305961-306566 bp Ori: AII10972.1 Feature: domain Description: AcrR Location: 305970-306546 bp Feature: domain Description: AcrR Location: 305970-306546 bp Feature: gene Location: 306661-307479 bp Ori: AII10973.1 Feature: domain Description: fabG Location: 306688-307417 bp Feature: domain Description: fabG Location: 306688-30741 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TauC (COG0600), YcaC_related (cd01012), SsuD (COG2141), AcrR (COG1309), fabG (PRK12825)

Seq: CP008947.1 Rhodococcus opacus strain R7 sequence (8466345 bp)
Overview 1 RT 1: 5575-10506 bp 2 RT 2: 197738-207232 bp Neighborhood of RT #1 [5575, 10541] GlnQ TIGR00004 RVT-Retrons LamB_like GatA Neighborhood of RT #2 [197738, 207240] PuuD ttLC_FACS_AEE21_like RVT-GII Intron_maturas2 HNHc SucB_Actino PRK11855 AceE Feature: gene Location: 5575-6339 bp Ori: AII03150.1 Feature: domain Description: GlnQ Location: 5590-6334 bp Feature: domain Description: GlnQ Location: 5590-6334 bp Feature: gene Location: 6398-6796 bp Ori: AII03151.1 Feature: domain Description: TIGR00004 Location: 6410-6767 bp Feature: domain Description: TIGR00004 Location: 6410-6767 bp Feature: gene Location: 7011-8252 bp Ori: AII03152.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7425-8016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 742 5-8016 bp Feature: gene Location: 8302-9033 bp Ori: AII03153.1 Feature: domain Description: LamB_like Location: 8314-9010 bp Feature: domain Description: LamB_like Location: 8314-9010 bp Feature: gene Location: 9033-10541 bp Ori: AII03154.1 Feature: domain Description: GatA Location: 9051-10506 bp Feature: domain Description: GatA Location: 9051-10506 bp Feature: gene Location: 197738-198469 bp Ori: AII03277.1 Feature: domain Description: PuuD Location: 197756-198452 bp Feature: domain Description: PuuD Location: 197756-198452 bp Feature: gene Location: 198547-200163 bp Ori: AII03278.1 Feature: domain Description: ttLC_FACS_AEE21_like Location: 198565-200125 bp Feature: domain Description: ttLC_FACS_AEE2 1_like Location: 198565-2 0012 5 bp Feature: gene Location: 201459-203240 bp Ori: AII03279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201720-202515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0172 0-2 02 515 bp Feature: domain Description: Intron_maturas2 Location: 202629-202845 bp Feature: domain Description: Intron_maturas2 Location: 2 02 62 9-2 02 845 bp Feature: domain Description: HNHc Note: nucleases Location: 203040-203196 bp Feature: domain Description: HNHc Note: nucleases Location: 2 03040-2 03196 bp Feature: gene Location: 203766-204872 bp Ori: AII03280.1 Feature: domain Description: SucB_Actino Location: 203793-204129 bp Feature: domain Description: SucB_Actino Location: 2 03793-2 0412 9 bp Feature: domain Description: PRK11855 Location: 204165-204846 bp Feature: domain Description: PRK11855 Location: 2 04165-2 04846 bp Feature: gene Location: 204889-207240 bp Ori: AII03281.1 Feature: domain Description: AceE Location: 204967-207232 bp Feature: domain Description: AceE Location: 2 04967-2 072 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnQ (COG1126), TIGR00004 (reactive intermediate/imine deaminase), RVT-Retrons, LamB_like (cd11665), GatA (COG0154), PuuD (COG2071), ttLC_FACS_AEE21_like (cd12118), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)
SucB_Actino (TIGR02927), PRK11855 (dihydrolipoamide acetyltransferase; Reviewed), AceE (COG2609)

Seq: CP008951.1 Rhodococcus opacus strain R7 plasmid pPDG4 sequence (191359 bp)
Overview 1 RT 1: 140960-146769 bp Neighborhood of RT #1 [140960, 146769] RVT-GII Intron_maturas2 HNHc PRK06142 Feature: gene Location: 140960-142741 bp Ori: AII11457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141221-142016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141221-142016 bp Feature: domain Description: Intron_maturas2 Location: 142130-142346 bp Feature: domain Description: Intron_maturas2 Location: 14213 0-1423 46 bp Feature: domain Description: HNHc Note: nucleases Location: 142541-142697 bp Feature: domain Description: HNHc Note: nucleases Location: 142541-142697 bp Feature: gene Location: 144013-144849 bp Ori: AII11458.1 Feature: domain Description: PRK06142 Location: 144034-144844 bp Feature: domain Description: PRK06142 Location: 14403 4-144844 bp Feature: gene Location: 145477-146769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK06142 (crotonase/enoyl-CoA hydratase family protein)

Seq: CP008948.1 Rhodococcus opacus strain R7 plasmid pPDG1 sequence (656443 bp)
Overview 1 RT 1: 160881-163132 bp Neighborhood of RT #1 [160881, 163188] 2-Hacid_dh_2 Aph RVT-GII Feature: gene Location: 160881-161804 bp Ori: AII10431.1 Feature: domain Description: 2-Hacid_dh_2 Location: 160908-161802 bp Feature: domain Description: 2-Hacid_dh_2 Location: 160908-161802 bp Feature: gene Location: 162197-162985 bp Ori: AII10432.1 Feature: domain Description: Aph Location: 162230-162983 bp Feature: domain Description: Aph Location: 162230-162983 bp Feature: gene Location: 162982-163188 bp Ori: AII10433.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162985-163132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162985-163132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2-Hacid_dh_2 (cd12159), Aph (COG3231), RVT-GII