myRT

myRT report for GCA_000736535.1_XBO_3527_PRJEB4323

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Seq: HG427252.1 Xenorhabdus bovienii str. oregonense genomic scaffold, XBO_3527_scaffold42, whole genome shotgun sequence (1681 bp)
Overview 1 RT 1: 102-1216 bp Neighborhood of RT #1 [102, 1578] RVT-GII Feature: gene Location: 102-233 bp Feature: gene Location: 193-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529-1216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529-1 21 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: HG427420.1 Xenorhabdus bovienii str. oregonense genomic scaffold, XBO_3527_scaffold210, whole genome shotgun sequence (15813 bp)
Overview 1 RT 1: 2932-6529 bp Neighborhood of RT #1 [2932, 6597] HTH_35 HipB RVT-Retrons Phage_int_SAM_4 INT_Lambda_C DUF4224 Feature: gene Location: 2932-3183 bp Feature: domain Description: HTH_35 Location: 2953-3172 bp Feature: domain Description: HTH_35 Location: 2 953-3172 bp Feature: gene Location: 3787-4095 bp Feature: domain Description: HipB Location: 3793-4048 bp Feature: domain Description: HipB Location: 3793-4048 bp Feature: gene Location: 4073-5023 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4256-4793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 56-4793 bp Feature: gene Location: 5354-6376 bp Feature: domain Description: Phage_int_SAM_4 Location: 5555-5789 bp Feature: domain Description: Phage_int_SAM_4 Location: 5555-5789 bp Feature: domain Description: INT_Lambda_C Location: 5864-6335 bp Feature: domain Description: INT_Lambda_C Location: 5864-6335 bp Feature: gene Location: 6379-6597 bp Feature: domain Description: DUF4224 Location: 6403-6529 bp Feature: domain Description: DUF42 2 4 Location: 6403-652 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_35 (pfam13693), HipB (COG1396), RVT-Retrons, Phage_int_SAM_4 (pfam13495), INT_Lambda_C (cd00800), DUF4224 (pfam13986)

Seq: HG427425.1 Xenorhabdus bovienii str. oregonense genomic scaffold, XBO_3527_scaffold215, whole genome shotgun sequence (40448 bp)
Overview 1 RT 1: 28715-37721 bp Neighborhood of RT #1 [28715, 37828] Vsr PRK10458 RVT-GII GIIM HNHc GIIM RVT-GII RVT_N RVT-GII conj_conj_conj_TIGR03747 conj_TOL_TraD Feature: gene Location: 28715-29188 bp Feature: domain Description: Vsr Location: 28718-29171 bp Feature: domain Description: Vsr Location: 28718-29171 bp Feature: gene Location: 29198-30640 bp Feature: domain Description: PRK10458 Location: 29237-30629 bp Feature: domain Description: PRK10458 Location: 2923 7-3 0629 bp Feature: gene Location: 30914-31825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30980-31130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0980-3 113 0 bp Feature: domain Description: GIIM Note: maturase Location: 31181-31415 bp Feature: domain Description: GIIM Note: maturase Location: 3 1181-3 1415 bp Feature: domain Description: HNHc Note: nucleases Location: 31637-31790 bp Feature: domain Description: HNHc Note: nucleases Location: 3 163 7-3 1790 bp Feature: gene Location: 31822-32067 bp Feature: domain Description: GIIM Note: maturase Location: 31828-31969 bp Feature: domain Description: GIIM Note: maturase Location: 3 1828-3 1969 bp Feature: gene Location: 32037-33230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32391-33048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 91-3 3 048 bp Feature: gene Location: 33608-34324 bp Feature: RT Description: RVT_N Location: 33611-33761 bp Feature: RT Description: RVT_N Location: 3 3 611-3 3 761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33806-34298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 806-3 4298 bp Feature: gene Location: 35135-35893 bp Feature: domain Description: conj_conj_conj_TIGR03747 Location: 35189-35891 bp Feature: domain Description: conj_conj_conj_TIGR03 747 Location: 3 5189-3 5891 bp Feature: gene Location: 35903-37828 bp Feature: domain Description: conj_TOL_TraD Location: 35909-37721 bp Feature: domain Description: conj_TOL_TraD Location: 3 5909-3 7721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Vsr (pfam03852), PRK10458 (DNA cytosine methylase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), conj_conj_conj_TIGR03747, conj_TOL_TraD (TIGR03754)