myRT

myRT report for GCA_000736555.1_XBKQ_3535_PRJEB4324

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Seq: HG427573.1 Xenorhabdus bovienii str. kraussei Quebec genomic scaffold, XBKQ_3535_scaffold85, whole genome shotgun sequence (3455 bp)
Overview 1 RT 1: 99-3246 bp Neighborhood of RT #1 [99, 3246] HTH_35 RVT-Retrons TIR_2 Feature: gene Location: 99-251 bp Feature: domain Description: HTH_35 Location: 102-228 bp Feature: domain Description: HTH_35 Location: 1 02-228 bp Feature: gene Location: 600-2252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 924-1521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 924-1 521 bp Feature: domain Description: TIR_2 Location: 1851-2130 bp Feature: domain Description: TIR_2 Location: 1 851 -21 30 bp Feature: gene Location: 2674-3015 bp Feature: gene Location: 3112-3246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), HTH_35 (pfam13693)

Seq: HG427744.1 Xenorhabdus bovienii str. kraussei Quebec genomic scaffold, XBKQ_3535_scaffold256, whole genome shotgun sequence (28190 bp)
Overview 1 RT 1: 24117-27560 bp Neighborhood of RT #1 [24117, 27751] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 24117-24272 bp Feature: gene Location: 24438-24557 bp Feature: gene Location: 24499-25431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24601-25192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4601-2 5192 bp Feature: gene Location: 25428-27074 bp Feature: domain Description: COG3950 Location: 25611-26958 bp Feature: domain Description: COG3950 Location: 2 5611-2 6958 bp Feature: gene Location: 27071-27751 bp Feature: domain Description: TIGR02646 Location: 27134-27560 bp Feature: domain Description: TIGR02 646 Location: 2 7134-2 7560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: HG427598.1 Xenorhabdus bovienii str. kraussei Quebec genomic scaffold, XBKQ_3535_scaffold110, whole genome shotgun sequence (4667 bp)
Overview 1 RT 1: 58-4156 bp Neighborhood of RT #1 [58, 4156] PRK09692 Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM INT_P4_C Feature: gene Location: 58-276 bp Feature: domain Description: PRK09692 Location: 67-262 bp Feature: domain Description: PRK09692 Location: 67-262 bp Feature: gene Location: 710-1672 bp Feature: domain Description: Arm-DNA-bind_3 Location: 719-962 bp Feature: domain Description: Arm-DNA-bind_3 Location: 719-962 bp Feature: domain Description: INT_P4_C Location: 1325-1613 bp Feature: domain Description: INT_P4_C Location: 13 25-1613 bp Feature: gene Location: 1683-3092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037-2694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 7-2694 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2994 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2994 bp Feature: gene Location: 3522-3767 bp Feature: domain Description: INT_P4_C Location: 3537-3732 bp Feature: domain Description: INT_P4_C Location: 3 53 7-3 73 2 bp Feature: gene Location: 3926-4156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), INT_P4_C (cd00801), PRK09692 (Integrase; provisional), Arm-DNA-bind_3 (pfam13356)