myRT

myRT report for GCA_000736595.1_XBFM_3523_PRJEB4321

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Seq: HG426988.1 Xenorhabdus bovienii str. feltiae Moldova genomic scaffold, XBFM_3523_scaffold26, whole genome shotgun sequence (17913 bp)
Overview 1 RT 1: 13264-17432 bp Neighborhood of RT #1 [13264, 17432] FhaC DDE_Tnp_IS1 RVT-GII Feature: gene Location: 13264-14946 bp Ori: CDH02644.1 Gene: shlB Feature: domain Description: FhaC Location: 13342-14944 bp Feature: domain Description: FhaC Location: 1 3342-1 4944 bp Feature: gene Location: 15489-15842 bp Ori: CDH02645.1 Gene: insB Feature: domain Description: DDE_Tnp_IS1 Location: 15492-15837 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 5492-1 5837 bp Feature: gene Location: 15959-17290 bp Ori: CDH02646.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16241-16928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6241 -1 6928 bp Feature: gene Location: 17301-17432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FhaC (COG2831), DDE_Tnp_IS1 (pfam03400), RVT-GII

Seq: HG427089.1 Xenorhabdus bovienii str. feltiae Moldova genomic scaffold, XBFM_3523_scaffold127, whole genome shotgun sequence (40005 bp)
Overview 1 RT 1: 137-4844 bp Neighborhood of RT #1 [137, 4861] COG3747 YmfN RVT-UG28 HTH_35 Feature: gene Location: 137-490 bp Ori: CDH00203.1 Feature: domain Description: COG3747 Location: 143-482 bp Feature: domain Description: COG3747 Location: 143-482 bp Feature: gene Location: 487-2148 bp Ori: CDH00204.1 Feature: domain Description: YmfN Location: 505-2125 bp Feature: domain Description: YmfN Location: 505-2 12 5 bp Feature: gene Location: 2411-4009 bp Ori: CDH00205.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2798-3434 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 2 798-3434 bp Feature: gene Location: 4185-4340 bp Feature: gene Location: 4604-4861 bp Ori: CDH00207.1 Gene: sfsB Feature: domain Description: HTH_35 Location: 4625-4844 bp Feature: domain Description: HTH_35 Location: 462 5-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3747 (Phage terminase, small subunit ), YmfN (COG4626), RVT-UG28, HTH_35 (pfam13693)

Seq: HG427107.1 Xenorhabdus bovienii str. feltiae Moldova genomic scaffold, XBFM_3523_scaffold145, whole genome shotgun sequence (25829 bp)
Overview 1 RT 1: 8193-12090 bp Neighborhood of RT #1 [8193, 12131] conj_conj_conj_TIGR03747 RVT_N RVT-GII GIIM HNHc AcrR Flavodoxin_2 Feature: gene Location: 8193-8315 bp Ori: CDH00414.1 Feature: domain Description: conj_conj_conj_TIGR03747 Location: 8199-8283 bp Feature: domain Description: conj_conj_conj_TIGR03 747 Location: 8199-8283 bp Feature: gene Location: 8269-8412 bp Feature: gene Location: 8949-10625 bp Ori: CDH00416.1 Feature: domain Description: RVT_N Location: 9006-9249 bp Feature: domain Description: RVT_N Location: 9006-9249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9294-9930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9294-993 0 bp Feature: domain Description: GIIM Note: maturase Location: 9981-10215 bp Feature: domain Description: GIIM Note: maturase Location: 9981-10215 bp Feature: domain Description: HNHc Note: nucleases Location: 10437-10590 bp Feature: domain Description: HNHc Note: nucleases Location: 1043 7-10590 bp Feature: gene Location: 10813-11502 bp Ori: CDH00417.1 Feature: domain Description: AcrR Location: 10927-11476 bp Feature: domain Description: AcrR Location: 10927-11476 bp Feature: gene Location: 11523-12131 bp Ori: CDH00418.1 Feature: domain Description: Flavodoxin_2 Location: 11529-12090 bp Feature: domain Description: Flavodoxin_2 Location: 11529-12090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_conj_conj_TIGR03747, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AcrR (COG1309), Flavodoxin_2 (pfam02525)

Seq: HG427023.1 Xenorhabdus bovienii str. feltiae Moldova genomic scaffold, XBFM_3523_scaffold61, whole genome shotgun sequence (2534 bp)
Overview 1 RT 1: 578-2453 bp Neighborhood of RT #1 [578, 2527] RVT-GII Rve Feature: gene Location: 578-1642 bp Ori: CDH03261.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1568 bp Feature: gene Location: 2015-2527 bp Ori: CDH03262.1 Feature: domain Description: Rve Location: 2108-2453 bp Feature: domain Description: Rve Location: 2108-24 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rve (COG3316)