myRT

myRT report for GCA_000736855.1_GFC_9

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Seq: JIDJ01000049.1 Vibrio cholerae strain 1311-69 DN36.contig00049, whole genome shotgun sequence (11616 bp)
Overview 1 RT 1: 5004-10659 bp Neighborhood of RT #1 [5004, 10670] TraF-like DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 5004-5948 bp Feature: domain Description: TraF-like Location: 5034-5814 bp Feature: domain Description: TraF-like Location: 5034-581 4 bp Feature: gene Location: 6417-6914 bp Feature: domain Description: DUF1566 Location: 6513-6903 bp Feature: domain Description: DUF1 566 Location: 651 3-6903 bp Feature: gene Location: 6983-8566 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7229-8009 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7229-8009 bp Feature: gene Location: 8709-9140 bp Feature: domain Description: Avd_like Location: 8736-9048 bp Feature: domain Description: Avd_like Location: 8736-9048 bp Feature: gene Location: 9177-10670 bp Feature: domain Description: DUF1566 Location: 10224-10659 bp Feature: domain Description: DUF1 566 Location: 1 0224-1 0659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraF-like (TIGR02740), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: JIDJ01000017.1 Vibrio cholerae strain 1311-69 DN36.contig00017, whole genome shotgun sequence (95710 bp)
Overview 1 RT 1: 66025-71177 bp Neighborhood of RT #1 [66025, 71206] groES groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 66025-66315 bp Feature: domain Description: groES Location: 66028-66313 bp Feature: domain Description: groES Location: 6602 8-66313 bp Feature: gene Location: 66369-68003 bp Feature: domain Description: groEL Location: 66375-67998 bp Feature: domain Description: groEL Location: 66375-67998 bp Feature: gene Location: 69114-70799 bp Feature: RT Description: RVT_N Location: 69171-69414 bp Feature: RT Description: RVT_N Location: 69171-69414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69459-70104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69459-70104 bp Feature: domain Description: GIIM Note: maturase Location: 70155-70389 bp Feature: domain Description: GIIM Note: maturase Location: 70155-70389 bp Feature: domain Description: HNHc Note: nucleases Location: 70605-70767 bp Feature: domain Description: HNHc Note: nucleases Location: 70605-70767 bp Feature: gene Location: 70789-70887 bp Feature: gene Location: 70985-71206 bp Feature: domain Description: DUF2188 Location: 71000-71177 bp Feature: domain Description: DUF2 188 Location: 71000-71177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)

Seq: JIDJ01000071.1 Vibrio cholerae strain 1311-69 DN36.contig00071, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 37-1120 bp Neighborhood of RT #1 [37, 1347] RVT-GII GIIM Feature: gene Location: 37-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 -868 bp Feature: domain Description: GIIM Note: maturase Location: 916-1120 bp Feature: domain Description: GIIM Note: maturase Location: 916-1120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)