myRT

myRT report for GCA_000736875.1_GFC_11

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Seq: JIDL01000015.1 Vibrio cholerae strain 1157-74 DN38.contig00015, whole genome shotgun sequence (77682 bp)
Overview 1 RT 1: 47097-53047 bp Neighborhood of RT #1 [47097, 53049] DUF2188 RVT-GII GIIM HNHc groEL groES Feature: gene Location: 47097-47657 bp Feature: gene Location: 47981-48208 bp Feature: domain Description: DUF2188 Location: 47996-48173 bp Feature: domain Description: DUF21 88 Location: 47996-481 73 bp Feature: gene Location: 48302-49573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48305-48905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48305-48905 bp Feature: domain Description: GIIM Note: maturase Location: 48956-49190 bp Feature: domain Description: GIIM Note: maturase Location: 48956-491 90 bp Feature: domain Description: HNHc Note: nucleases Location: 49406-49568 bp Feature: domain Description: HNHc Note: nucleases Location: 49406-49568 bp Feature: gene Location: 51071-52705 bp Feature: domain Description: groEL Location: 51077-52700 bp Feature: domain Description: groEL Location: 51 077-52700 bp Feature: gene Location: 52759-53049 bp Feature: domain Description: groES Location: 52762-53047 bp Feature: domain Description: groES Location: 52762-53047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: JIDL01000007.1 Vibrio cholerae strain 1157-74 DN38.contig00007, whole genome shotgun sequence (128098 bp)
Overview 1 RT 1: 5529-10388 bp Neighborhood of RT #1 [5529, 10408] DUF3751 34 PHA00653 PHA00652 RVT-DGRs AroC Feature: gene Location: 5529-7046 bp Feature: domain Description: DUF3751 Location: 5556-5946 bp Feature: domain Description: DUF3751 Location: 5556-5946 bp Feature: domain Description: 34 Location: 5964-6069 bp Feature: domain Description: 34 Location: 5964-6069 bp Feature: domain Description: PHA00653 Location: 6096-7038 bp Feature: domain Description: PHA00653 Location: 6096-7038 bp Feature: gene Location: 7068-7430 bp Feature: domain Description: PHA00652 Location: 7083-7425 bp Feature: domain Description: PHA00652 Location: 7083-742 5 bp Feature: gene Location: 7826-8713 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7922-8576 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 792 2 -8576 bp Feature: gene Location: 8692-8925 bp Feature: gene Location: 9323-10408 bp Feature: domain Description: AroC Location: 9332-10388 bp Feature: domain Description: AroC Location: 9332 -10388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), 34 (PHA02584), PHA00653 (mtd;major tropism determinant), PHA00652 (hypothetical protein), RVT-DGRs, AroC (COG0082)