myRT

myRT report for GCA_000737315.1_ASM73731v1

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Seq: JMCB01000005.1 Hyalangium minutum strain DSM 14724 contig_5, whole genome shotgun sequence (504291 bp)
Overview 1 RT 1: 331108-338713 bp Neighborhood of RT #1 [331108, 338713] WGR_DNA_ligase HEAT_2 HEAT_2 SWIM RVT-Retrons Feature: gene Location: 331108-334215 bp Feature: domain Description: WGR_DNA_ligase Location: 331126-331342 bp Feature: domain Description: WGR_DNA_ligase Location: 331 1 26-331 342 bp Feature: domain Description: HEAT_2 Location: 331570-331777 bp Feature: domain Description: HEAT_2 Location: 331 570-331 777 bp Feature: domain Description: HEAT_2 Location: 333133-333361 bp Feature: domain Description: HEAT_2 Location: 3331 33-333361 bp Feature: gene Location: 334205-335851 bp Feature: domain Description: SWIM Location: 335735-335819 bp Feature: domain Description: SWIM Location: 335735-33581 9 bp Feature: gene Location: 336133-337710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 336685-337300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 336685-337300 bp Feature: gene Location: 337736-337984 bp Feature: gene Location: 338090-338713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), SWIM (pfam04434), RVT-Retrons

Seq: JMCB01000006.1 Hyalangium minutum strain DSM 14724 contig_6, whole genome shotgun sequence (1037819 bp)
Overview 1 RT 1: 661600-667395 bp Neighborhood of RT #1 [661600, 667445] Radical_SAM IV_pilin_GFxxxE Pilin_PilA RVT-Retrons HARE-HTH PRK11331 Feature: gene Location: 661600-662937 bp Feature: domain Description: Radical_SAM Location: 662065-662479 bp Feature: domain Description: Radical_SAM Location: 662 065-662 479 bp Feature: gene Location: 662986-663648 bp Feature: domain Description: IV_pilin_GFxxxE Location: 663007-663073 bp Feature: domain Description: IV_pilin_GFxxxE Location: 663007-663073 bp Feature: domain Description: Pilin_PilA Location: 663094-663490 bp Feature: domain Description: Pilin_PilA Location: 663094-663490 bp Feature: gene Location: 664206-665648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 664764-665406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 664764-665406 bp Feature: gene Location: 665645-666133 bp Feature: gene Location: 666180-667445 bp Feature: domain Description: HARE-HTH Location: 666192-666423 bp Feature: domain Description: HARE-HTH Location: 666192 -66642 3 bp Feature: domain Description: PRK11331 Location: 666585-667395 bp Feature: domain Description: PRK11331 Location: 666585-667395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Radical_SAM (pfam04055), IV_pilin_GFxxxE (TIGR02532), Pilin_PilA (pfam14245), RVT-Retrons, HARE-HTH (pfam05066), PRK11331 (5-methylcytosine-specific restriction enzyme subunit McrB; Provisional)

Seq: JMCB01000009.1 Hyalangium minutum strain DSM 14724 contig_9, whole genome shotgun sequence (328372 bp)
Overview 1 RT 1: 196684-205641 bp Neighborhood of RT #1 [196684, 205641] DUF2201_N DUF2201_N DUF2201_N DUF2201 MoxR RVT-Retrons HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 Aldo_ket_red Feature: gene Location: 196684-198486 bp Feature: domain Description: DUF2201_N Location: 196759-197149 bp Feature: domain Description: DUF2201_N Location: 196759-197149 bp Feature: domain Description: DUF2201_N Location: 197320-197716 bp Feature: domain Description: DUF2201_N Location: 1973 20-197716 bp Feature: domain Description: DUF2201_N Location: 197881-198076 bp Feature: domain Description: DUF2201_N Location: 197881-198076 bp Feature: domain Description: DUF2201 Location: 198112-198382 bp Feature: domain Description: DUF2201 Location: 198112-1983 82 bp Feature: gene Location: 198476-199537 bp Feature: domain Description: MoxR Location: 198524-198938 bp Feature: domain Description: MoxR Location: 198524-19893 8 bp Feature: gene Location: 199708-201123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 200302-200896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2003 02-200896 bp Feature: gene Location: 201365-204241 bp Feature: domain Description: HEAT_2 Location: 201473-201725 bp Feature: domain Description: HEAT_2 Location: 201473 -201725 bp Feature: domain Description: HEAT Location: 201752-201818 bp Feature: domain Description: HEAT Location: 201752-201818 bp Feature: domain Description: HEAT_2 Location: 202067-202196 bp Feature: domain Description: HEAT_2 Location: 202067-202196 bp Feature: domain Description: HEAT_2 Location: 202358-202499 bp Feature: domain Description: HEAT_2 Location: 2023 58-202499 bp Feature: domain Description: HEAT_2 Location: 202631-202787 bp Feature: domain Description: HEAT_2 Location: 20263 1-202787 bp Feature: domain Description: HEAT_2 Location: 202799-203051 bp Feature: domain Description: HEAT_2 Location: 202799-203 051 bp Feature: domain Description: Aldo_ket_red Location: 203378-204107 bp Feature: domain Description: Aldo_ket_red Location: 203 3 78-204107 bp Feature: gene Location: 204280-205641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2201_N (pfam13203), DUF2201 (pfam09967), MoxR (COG0714), RVT-Retrons, HEAT_2 (pfam13646), HEAT (sd00044), Aldo_ket_red (pfam00248)

Seq: JMCB01000011.1 Hyalangium minutum strain DSM 14724 contig_11, whole genome shotgun sequence (307478 bp)
Overview 1 RT 1: 187134-194087 bp Neighborhood of RT #1 [187134, 194104] SWIM RVT-Retrons USP_Like USP_Like USP_Like Feature: gene Location: 187134-189065 bp Feature: gene Location: 189062-190702 bp Feature: domain Description: SWIM Location: 190424-190538 bp Feature: domain Description: SWIM Location: 1904 24 -190538 bp Feature: gene Location: 190871-192172 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191357-191966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191357-191966 bp Feature: gene Location: 192174-192701 bp Feature: gene Location: 192809-194104 bp Feature: domain Description: USP_Like Location: 192818-193193 bp Feature: domain Description: USP_Like Location: 192818-193193 bp Feature: domain Description: USP_Like Location: 193385-193661 bp Feature: domain Description: USP_Like Location: 193385-193661 bp Feature: domain Description: USP_Like Location: 193715-194087 bp Feature: domain Description: USP_Like Location: 193715-194 087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, USP_Like (cd00293)

Seq: JMCB01000010.1 Hyalangium minutum strain DSM 14724 contig_10, whole genome shotgun sequence (325941 bp)
Overview 1 RT 1: 238331-244210 bp Neighborhood of RT #1 [238331, 244210] Abhydrolase_6 RVT-GII GIIM PG_binding_1 Feature: gene Location: 238331-238741 bp Feature: gene Location: 238878-239858 bp Feature: domain Description: Abhydrolase_6 Location: 239193-239826 bp Feature: domain Description: Abhydrolase_6 Location: 239193-239826 bp Feature: gene Location: 240252-241583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240576-241233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405 76-241233 bp Feature: domain Description: GIIM Note: maturase Location: 241308-241509 bp Feature: domain Description: GIIM Note: maturase Location: 241308-2415 09 bp Feature: gene Location: 242796-244007 bp Feature: domain Description: PG_binding_1 Location: 242799-242961 bp Feature: domain Description: PG_binding_1 Location: 242799-242961 bp Feature: gene Location: 244016-244210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abhydrolase_6 (pfam12697), RVT-GII, GIIM (pfam08388), PG_binding_1 (pfam01471)