myRT

myRT report for GCA_000739815.1_ASM73981v1

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Seq: BBJJ01000267.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON90322, whole genome shotgun sequence (1770 bp)
Overview 1 RT 1: 2-1368 bp Neighborhood of RT #1 [2, 1748] RVT-GII Feature: gene Location: 2-385 bp Feature: gene Location: 270-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681-1368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681 -1 368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BBJJ01000256.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON24601, whole genome shotgun sequence (2005 bp)
Overview 1 RT 1: 502-1738 bp Neighborhood of RT #1 [502, 1824] RVT-GII GIIM Feature: gene Location: 502-1824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805-1444 bp Feature: domain Description: GIIM Note: maturase Location: 1519-1738 bp Feature: domain Description: GIIM Note: maturase Location: 1519-1738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BBJJ01000183.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON17501, whole genome shotgun sequence (3940 bp)
Overview 1 RT 1: 61-3713 bp Neighborhood of RT #1 [61, 3718] RVT-GII WecC Feature: gene Location: 61-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487-1177 bp Feature: gene Location: 1656-1880 bp Feature: gene Location: 2165-3718 bp Feature: domain Description: WecC Location: 2414-3713 bp Feature: domain Description: WecC Location: 2414-3 713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, WecC (COG0677)

Seq: BBJJ01000178.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON17001, whole genome shotgun sequence (4120 bp)
Overview 1 RT 1: 208-2568 bp Neighborhood of RT #1 [208, 2568] RVT_N RVT-GII GIIM HNH Hns Feature: gene Location: 208-1911 bp Feature: domain Description: RVT_N Location: 262-505 bp Feature: domain Description: RVT_N Location: 262-505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550-1189 bp Feature: domain Description: GIIM Note: maturase Location: 1240-1474 bp Feature: domain Description: GIIM Note: maturase Location: 124 0-14 74 bp Feature: domain Description: HNH Note: nucleases Location: 1732-1858 bp Feature: domain Description: HNH Note: nucleases Location: 1732-1858 bp Feature: gene Location: 1926-2267 bp Feature: domain Description: Hns Location: 2031-2157 bp Feature: domain Description: Hns Location: 2031-2157 bp Feature: gene Location: 2329-2568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Hns (COG2916)

Seq: BBJJ01000160.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON15201, whole genome shotgun sequence (5413 bp)
Overview 1 RT 1: 3-2284 bp Neighborhood of RT #1 [3, 2284] RVT-GII GIIM PHA02517 Feature: gene Location: 3-296 bp Feature: gene Location: 322-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-5 62 bp Feature: domain Description: GIIM Note: maturase Location: 637-856 bp Feature: domain Description: GIIM Note: maturase Location: 637-85 6 bp Feature: gene Location: 1096-1410 bp Feature: domain Description: PHA02517 Location: 1168-1303 bp Feature: domain Description: PHA025 17 Location: 1168-1303 bp Feature: gene Location: 1943-2284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: BBJJ01000157.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON14801, whole genome shotgun sequence (5604 bp)
Overview 1 RT 1: 8-3639 bp Neighborhood of RT #1 [8, 3680] Dimer_Tnp_Tn5 RVT-GII GIIM RVT-GII Tnp_DNA_bind Cache_2 Feature: gene Location: 8-496 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 194-476 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 194-476 bp Feature: gene Location: 707-1180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 716-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 716 -944 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1136 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1136 bp Feature: gene Location: 1195-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1480-1816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1480-1816 bp Feature: gene Location: 1862-3298 bp Feature: domain Description: Tnp_DNA_bind Location: 1868-2021 bp Feature: domain Description: Tnp_DNA_bind Location: 186 8-2021 bp Feature: gene Location: 3375-3680 bp Feature: domain Description: Cache_2 Location: 3477-3639 bp Feature: domain Description: Cache_2 Location: 3477-36 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dimer_Tnp_Tn5 (pfam02281), RVT-GII, GIIM (pfam08388), Tnp_DNA_bind (pfam14706), Cache_2 (smart01049)

Seq: BBJJ01000154.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON14501, whole genome shotgun sequence (5929 bp)
Overview 1 RT 1: 4557-5796 bp Neighborhood of RT #1 [4557, 5861] RVT-GII GIIM Feature: gene Location: 4557-4703 bp Feature: gene Location: 5015-5353 bp Feature: gene Location: 5340-5861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5385-5499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5385-5499 bp Feature: domain Description: GIIM Note: maturase Location: 5574-5796 bp Feature: domain Description: GIIM Note: maturase Location: 557 4-57 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BBJJ01000149.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON14001, whole genome shotgun sequence (6661 bp)
Overview 1 RT 1: 5840-6659 bp Neighborhood of RT #1 [5840, 6658] DUF5372 RVT-GII Feature: gene Location: 5840-6172 bp Feature: gene Location: 6225-6512 bp Feature: domain Description: DUF5372 Location: 6243-6474 bp Feature: domain Description: DUF5372 Location: 6243-6474 bp Feature: gene Location: 6530-6658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6542-6659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6542-6659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII

Seq: BBJJ01000104.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON09501, whole genome shotgun sequence (15818 bp)
Overview 1 RT 1: 2-2293 bp Neighborhood of RT #1 [2, 2340] RVT_N RVT-GII GIIM IS5 Feature: gene Location: 2-1186 bp Feature: domain Description: RVT_N Location: 77-314 bp Feature: domain Description: RVT_N Location: 77-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1007 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1184 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1184 bp Feature: gene Location: 1368-1586 bp Feature: gene Location: 1738-2340 bp Feature: domain Description: IS5 Location: 1930-2293 bp Feature: domain Description: IS5 Location: 19 30-229 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: BBJJ01000089.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON08101, whole genome shotgun sequence (20142 bp)
Overview 1 RT 1: 12362-19669 bp Neighborhood of RT #1 [12362, 19669] ABC_ATPase AAA_21 rubredoxin rubredoxin RVT-Retrons Feature: gene Location: 12362-15337 bp Feature: domain Description: ABC_ATPase Location: 13331-13415 bp Feature: domain Description: ABC_ATPase Location: 13331-13415 bp Feature: domain Description: AAA_21 Location: 14825-15143 bp Feature: domain Description: AAA_21 Location: 14825-15143 bp Feature: gene Location: 15475-16803 bp Feature: domain Description: rubredoxin Location: 15715-15769 bp Feature: domain Description: rubredoxin Location: 15715-15769 bp Feature: domain Description: rubredoxin Location: 16384-16480 bp Feature: domain Description: rubredoxin Location: 16384-16480 bp Feature: gene Location: 16902-18566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16962-17604 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16962-17604 bp Feature: gene Location: 18744-19061 bp Feature: gene Location: 19220-19669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_ATPase (pfam09818), AAA_21 (pfam13304), rubredoxin (cd00730), RVT-Retrons

Seq: BBJJ01000055.1 Paraburkholderia mimosarum LMG 23256 = NBRC 106338 DNA, contig: BMI01S_CON04901, whole genome shotgun sequence (48018 bp)
Overview 1 RT 1: 44335-47557 bp Neighborhood of RT #1 [44335, 47595] PssA PRK05305 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 44335-45210 bp Feature: domain Description: PssA Location: 44476-45154 bp Feature: domain Description: PssA Location: 44476-45154 bp Feature: gene Location: 45223-45876 bp Feature: domain Description: PRK05305 Location: 45247-45859 bp Feature: domain Description: PRK05305 Location: 45247-45859 bp Feature: gene Location: 45994-47595 bp Feature: domain Description: RVT_N Location: 45997-46195 bp Feature: domain Description: RVT_N Location: 45997-46195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46240-46888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46240-46888 bp Feature: domain Description: GIIM Note: maturase Location: 46942-47173 bp Feature: domain Description: GIIM Note: maturase Location: 46942-47173 bp Feature: domain Description: HNHc Note: nucleases Location: 47380-47557 bp Feature: domain Description: HNHc Note: nucleases Location: 47380-47557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)