myRT

myRT report for GCA_000742775.1_ASM74277v1

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Seq: JPRQ01000001.1 Pseudomonas sp. 1-7 pse1-7-1, whole genome shotgun sequence (181701 bp)
Overview 1 RT 1: 47743-54110 bp Neighborhood of RT #1 [47743, 54121] TlyC RVT_N RVT-GII GIIM PRK15426 Feature: gene Location: 47743-49116 bp Feature: domain Description: TlyC Location: 47767-49090 bp Feature: domain Description: TlyC Location: 47767-49090 bp Feature: gene Location: 49992-50321 bp Feature: gene Location: 50329-51642 bp Feature: RT Description: RVT_N Location: 50389-50632 bp Feature: RT Description: RVT_N Location: 50389-50632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50680-51328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50680-51 328 bp Feature: domain Description: GIIM Note: maturase Location: 51409-51511 bp Feature: domain Description: GIIM Note: maturase Location: 51 409-51 51 1 bp Feature: gene Location: 52961-54121 bp Feature: domain Description: PRK15426 Location: 53606-54110 bp Feature: domain Description: PRK1 5426 Location: 53606-541 1 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TlyC (COG1253), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK15426 (cellulose biosynthesis regulator YedQ)

Seq: JPRQ01000030.1 Pseudomonas sp. 1-7 pse1-7-30, whole genome shotgun sequence (47274 bp)
Overview 1 RT 1: 1-3808 bp Neighborhood of RT #1 [1, 3825] RVT-GII aspA PRK10082 Feature: gene Location: 1-854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 -847 bp Feature: gene Location: 1141-2565 bp Feature: domain Description: aspA Location: 1156-2548 bp Feature: domain Description: aspA Location: 1156-2 548 bp Feature: gene Location: 2920-3825 bp Feature: domain Description: PRK10082 Location: 2926-3808 bp Feature: domain Description: PRK10082 Location: 2 92 6-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT aspA (TIGR00839), RVT-GII

Seq: JPRQ01000022.1 Pseudomonas sp. 1-7 pse1-7-22, whole genome shotgun sequence (135882 bp)
Overview 1 RT 1: 125373-132131 bp Neighborhood of RT #1 [125373, 132385] COG1033 RVT-GII GIIM BatD Feature: gene Location: 125373-127727 bp Feature: domain Description: COG1033 Location: 125409-127704 bp Feature: domain Description: COG103 3 Location: 125409-127704 bp Feature: gene Location: 128271-128585 bp Feature: gene Location: 128781-130202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129138-129753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12913 8-129753 bp Feature: domain Description: GIIM Note: maturase Location: 129807-130035 bp Feature: domain Description: GIIM Note: maturase Location: 129807-13 003 5 bp Feature: gene Location: 130745-132385 bp Feature: domain Description: BatD Location: 130778-132131 bp Feature: domain Description: BatD Location: 13 0778-13 213 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1033 (Predicted exporter protein, RND superfamily ), RVT-GII, GIIM (pfam08388), BatD (pfam13584)

Seq: JPRQ01000023.1 Pseudomonas sp. 1-7 pse1-7-23, whole genome shotgun sequence (75949 bp)
Overview 1 RT 1: 59482-64617 bp Neighborhood of RT #1 [59482, 64619] efp_adjacent_2 RVT-GII GIIM PinE Feature: gene Location: 59482-60624 bp Feature: domain Description: efp_adjacent_2 Location: 59494-60598 bp Feature: domain Description: efp_adjacent_2 Location: 594 94 -60598 bp Feature: gene Location: 60733-60939 bp Feature: gene Location: 61193-62560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61523-62141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61523-6214 1 bp Feature: domain Description: GIIM Note: maturase Location: 62198-62408 bp Feature: domain Description: GIIM Note: maturase Location: 62198-624 08 bp Feature: gene Location: 62631-62849 bp Feature: gene Location: 64062-64619 bp Feature: domain Description: PinE Location: 64071-64617 bp Feature: domain Description: PinE Location: 64 071-64 617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT efp_adjacent_2, RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: JPRQ01000029.1 Pseudomonas sp. 1-7 pse1-7-29, whole genome shotgun sequence (149579 bp)
Overview 1 RT 1: 52548-57848 bp Neighborhood of RT #1 [52548, 57853] RVT-GII GIIM PRK05257 LrgB Feature: gene Location: 52548-52859 bp Feature: gene Location: 52921-53316 bp Feature: gene Location: 53578-54945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53908-54526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 3908-5 45 26 bp Feature: domain Description: GIIM Note: maturase Location: 54583-54793 bp Feature: domain Description: GIIM Note: maturase Location: 5 45 83-5 4793 bp Feature: gene Location: 55265-56872 bp Feature: domain Description: PRK05257 Location: 55334-56807 bp Feature: domain Description: PRK05 25 7 Location: 5 5 334-5 6807 bp Feature: gene Location: 57170-57853 bp Feature: domain Description: LrgB Location: 57185-57848 bp Feature: domain Description: LrgB Location: 5 7185 -5 7848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK05257 (malate:quinone oxidoreductase; Validated), LrgB (pfam04172)

Seq: JPRQ01000034.1 Pseudomonas sp. 1-7 pse1-7-34, whole genome shotgun sequence (210355 bp)
Overview 1 RT 1: 113763-119037 bp Neighborhood of RT #1 [113763, 119216] XylR_N V4R RocR RVT-GII GIIM Feature: gene Location: 113763-114020 bp Feature: gene Location: 114248-115942 bp Feature: domain Description: XylR_N Location: 114281-114581 bp Feature: domain Description: XylR_N Location: 114281-114581 bp Feature: domain Description: V4R Location: 114623-114800 bp Feature: domain Description: V4R Location: 1146 23-114800 bp Feature: domain Description: RocR Location: 114863-115907 bp Feature: domain Description: RocR Location: 11486 3-115907 bp Feature: gene Location: 117795-119216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118152-118767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118152-11876 7 bp Feature: domain Description: GIIM Note: maturase Location: 118824-119037 bp Feature: domain Description: GIIM Note: maturase Location: 118824-119037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XylR_N (pfam06505), V4R (smart00989), RocR (COG3829), RVT-GII, GIIM (pfam08388)