myRT

myRT report for GCA_000743865.1_BDX

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Seq: KN050656.1 Bacillus cereus strain 13061 genomic scaffold scaffold1, whole genome shotgun sequence (5133040 bp)
Overview 1 RT 1: 1662374-1669639 bp 2 RT 2: 1694155-1698503 bp 3 RT 3: 1758954-1763758 bp 4 RT 4: 2073950-2085384 bp 5 RT 5: 2165551-2170525 bp 6 RT 6: 2419133-2425775 bp 7 RT 7: 3374073-3380922 bp 8 RT 8: 4453125-4458097 bp 9 RT 9: 4554633-4559631 bp Neighborhood of RT #1 [1662374, 1669647] PRK08068 nitrilase_5 RVT-GII RVT-GII HNHc mtnK mtnA Neighborhood of RT #2 [1694155, 1698514] HTH_MlrA-like_sg1 DUF3967 RVT-GII Intron_maturas2 HNHc ComJ Neighborhood of RT #3 [1758954, 1763763] caa3_CtaG amiF RVT-GII group_II_RT_mat HNHc amiF Neighborhood of RT #4 [2073950, 2085384] RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Neighborhood of RT #5 [2165551, 2170761] PBP2_OppA Cfa RVT-GII RVT-GII group_II_RT_mat HNHc UbiE Neighborhood of RT #6 [2419133, 2425867] DUF4430 EcfT RVT-GII RVT-GII HNHc ABC_cobalt_CbiO_domain1 ABC_cobalt_CbiO_domain1 ECF-ribofla_trS Neighborhood of RT #7 [3374073, 3380924] Methyltransf_31 PRK12451 RVT-GII Intron_maturas2 HNHc SAM_MT YphP_YqiW Neighborhood of RT #8 [4453125, 4458097] Cyt_C5_DNA_methylase Dcm RVT-GII GIIM RVT-GII COG1787 Neighborhood of RT #9 [4554633, 4559633] HxlR TTHA1623-like_MBL-fold RVT-GII HNHc metallo-hydrolase-like_MBL-fold PRK12856 Feature: gene Location: 1662374-1663516 bp Ori: KFL85058.1 Feature: domain Description: PRK08068 Location: 1662377-1663508 bp Feature: domain Description: PRK08068 Location: 1 662377-1 663508 bp Feature: gene Location: 1663651-1664322 bp Ori: KFL85193.1 Feature: domain Description: nitrilase_5 Location: 1663657-1664308 bp Feature: domain Description: nitrilase_5 Location: 1 663657-1 664308 bp Feature: gene Location: 1665038-1665598 bp Ori: KFL85154.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1665338-1665590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 665338-1 665590 bp Feature: gene Location: 1665580-1666869 bp Ori: KFL85171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1665589-1666042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 665589-1 666042 bp Feature: domain Description: HNHc Note: nucleases Location: 1666621-1666753 bp Feature: domain Description: HNHc Note: nucleases Location: 1 666621 -1 666753 bp Feature: gene Location: 1667414-1668595 bp Ori: KFL85227.1 Gene: mtnK Feature: domain Description: mtnK Location: 1667417-1668575 bp Feature: domain Description: mtnK Location: 1 66741 7-1 668575 bp Feature: gene Location: 1668592-1669647 bp Ori: KFL85317.1 Gene: mtnA Feature: domain Description: mtnA Location: 1668616-1669639 bp Feature: domain Description: mtnA Location: 1 66861 6-1 669639 bp Feature: gene Location: 1694155-1694904 bp Ori: KFL84628.1 Feature: domain Description: HTH_MlrA-like_sg1 Location: 1694170-1694326 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 1 6941 70-1 694326 bp Feature: domain Description: DUF3967 Location: 1694758-1694851 bp Feature: domain Description: DUF3967 Location: 1 694758-1 694851 bp Feature: gene Location: 1695141-1695458 bp Feature: gene Location: 1696063-1697856 bp Ori: KFL84666.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1696306-1697137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 696306-1 6971 37 bp Feature: domain Description: Intron_maturas2 Location: 1697218-1697506 bp Feature: domain Description: Intron_maturas2 Location: 1 69721 8-1 697506 bp Feature: domain Description: HNHc Note: nucleases Location: 1697686-1697827 bp Feature: domain Description: HNHc Note: nucleases Location: 1 697686-1 697827 bp Feature: gene Location: 1697924-1698088 bp Feature: gene Location: 1698125-1698514 bp Ori: KFL84728.1 Feature: domain Description: ComJ Location: 1698131-1698503 bp Feature: domain Description: ComJ Location: 1 6981 31 -1 698503 bp Feature: gene Location: 1758954-1759859 bp Ori: KFL84608.1 Gene: ctaG Feature: domain Description: caa3_CtaG Location: 1758963-1759803 bp Feature: domain Description: caa3_CtaG Location: 1 758963-1 759803 bp Feature: gene Location: 1760087-1760476 bp Ori: KFL84639.1 Feature: domain Description: amiF Location: 1760090-1760462 bp Feature: domain Description: amiF Location: 1 760090-1 760462 bp Feature: gene Location: 1761192-1762289 bp Ori: KFL84756.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1761492-1762182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 761 492-1 7621 82 bp Feature: gene Location: 1762250-1763023 bp Ori: KFL84500.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1762253-1762457 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 762253-1 762457 bp Feature: domain Description: HNHc Note: nucleases Location: 1762775-1762907 bp Feature: domain Description: HNHc Note: nucleases Location: 1 762775-1 762907 bp Feature: gene Location: 1763140-1763763 bp Ori: KFL84575.1 Feature: domain Description: amiF Location: 1763143-1763758 bp Feature: domain Description: amiF Location: 1 7631 43-1 763758 bp Feature: gene Location: 2073950-2074141 bp Feature: gene Location: 2074154-2074567 bp Feature: gene Location: 2075574-2077502 bp Ori: KFL82124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075895-2076630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075895-2076630 bp Feature: domain Description: HNHc Note: nucleases Location: 2077221-2077386 bp Feature: domain Description: HNHc Note: nucleases Location: 2077221 -2077386 bp Feature: gene Location: 2077671-2084036 bp Ori: KFL81855.1 Feature: domain Description: B_ant_repeat Location: 2077680-2077818 bp Feature: domain Description: B_ant_repeat Location: 2077680-207781 8 bp Feature: domain Description: B_ant_repeat Location: 2078055-2078208 bp Feature: domain Description: B_ant_repeat Location: 2078055-2078208 bp Feature: domain Description: B_ant_repeat Location: 2078445-2078598 bp Feature: domain Description: B_ant_repeat Location: 2078445-2078598 bp Feature: domain Description: B_ant_repeat Location: 2078838-2078991 bp Feature: domain Description: B_ant_repeat Location: 2078838-2078991 bp Feature: domain Description: B_ant_repeat Location: 2079234-2079390 bp Feature: domain Description: B_ant_repeat Location: 2079234-2079390 bp Feature: domain Description: B_ant_repeat Location: 2079630-2079786 bp Feature: domain Description: B_ant_repeat Location: 2079630-2079786 bp Feature: domain Description: B_ant_repeat Location: 2080026-2080182 bp Feature: domain Description: B_ant_repeat Location: 2080026-20801 82 bp Feature: domain Description: B_ant_repeat Location: 2080422-2080575 bp Feature: domain Description: B_ant_repeat Location: 2080422-2080575 bp Feature: domain Description: B_ant_repeat Location: 2080818-2080974 bp Feature: domain Description: B_ant_repeat Location: 208081 8-2080974 bp Feature: domain Description: B_ant_repeat Location: 2081214-2081370 bp Feature: domain Description: B_ant_repeat Location: 2081 21 4-2081 370 bp Feature: domain Description: B_ant_repeat Location: 2081610-2081766 bp Feature: domain Description: B_ant_repeat Location: 2081 61 0-2081 766 bp Feature: domain Description: B_ant_repeat Location: 2082006-2082159 bp Feature: domain Description: B_ant_repeat Location: 2082006-20821 59 bp Feature: domain Description: B_ant_repeat Location: 2082402-2082558 bp Feature: domain Description: B_ant_repeat Location: 2082402-2082558 bp Feature: domain Description: B_ant_repeat Location: 2082798-2082954 bp Feature: domain Description: B_ant_repeat Location: 2082798-2082954 bp Feature: domain Description: B_ant_repeat Location: 2083194-2083350 bp Feature: domain Description: B_ant_repeat Location: 20831 94-2083350 bp Feature: domain Description: B_ant_repeat Location: 2083590-2083743 bp Feature: domain Description: B_ant_repeat Location: 2083590-2083743 bp Feature: gene Location: 2084314-2085384 bp Feature: gene Location: 2165551-2167257 bp Ori: KFL82360.1 Feature: domain Description: PBP2_OppA Location: 2165719-2167243 bp Feature: domain Description: PBP2_OppA Location: 21 6571 9-21 67243 bp Feature: gene Location: 2167365-2167613 bp Ori: KFL81980.1 Feature: domain Description: Cfa Location: 2167446-2167587 bp Feature: domain Description: Cfa Location: 21 67446-21 67587 bp Feature: gene Location: 2168325-2169185 bp Ori: KFL82243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2168625-2169183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 68625-21 691 83 bp Feature: gene Location: 2169185-2169421 bp Ori: KFL82507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2169188-2169329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 691 88-21 69329 bp Feature: gene Location: 2169382-2170155 bp Ori: KFL82472.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2169385-2169589 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21 69385-21 69589 bp Feature: domain Description: HNHc Note: nucleases Location: 2169907-2170039 bp Feature: domain Description: HNHc Note: nucleases Location: 21 69907-21 70039 bp Feature: gene Location: 2170219-2170761 bp Ori: KFL81774.1 Feature: domain Description: UbiE Location: 2170300-2170525 bp Feature: domain Description: UbiE Location: 21 70300-21 70525 bp Feature: gene Location: 2419133-2419981 bp Ori: KFL81507.1 Feature: domain Description: DUF4430 Location: 2419760-2419970 bp Feature: domain Description: DUF4430 Location: 241 9760-241 9970 bp Feature: gene Location: 2420004-2420783 bp Ori: KFL81841.1 Feature: domain Description: EcfT Location: 2420025-2420730 bp Feature: domain Description: EcfT Location: 2420025-2420730 bp Feature: gene Location: 2421499-2421960 bp Ori: KFL81831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421799-2421910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421 799-2421 91 0 bp Feature: gene Location: 2422040-2423329 bp Ori: KFL81826.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2422082-2422502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2422082-2422502 bp Feature: domain Description: HNHc Note: nucleases Location: 2423081-2423213 bp Feature: domain Description: HNHc Note: nucleases Location: 2423081 -242321 3 bp Feature: gene Location: 2423532-2425193 bp Ori: KFL82067.1 Gene: ccmA Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2423556-2424198 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2423556-24241 98 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2424423-2425041 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2424423-2425041 bp Feature: gene Location: 2425166-2425867 bp Ori: KFL82456.1 Feature: domain Description: ECF-ribofla_trS Location: 2425340-2425775 bp Feature: domain Description: ECF-ribofla_trS Location: 2425340-2425775 bp Feature: gene Location: 3374073-3374951 bp Ori: KFL83434.1 Feature: domain Description: Methyltransf_31 Location: 3374184-3374520 bp Feature: domain Description: Methyltransf_31 Location: 33741 84-3374520 bp Feature: gene Location: 3375127-3376815 bp Ori: KFL83529.1 Gene: argS Feature: domain Description: PRK12451 Location: 3375130-3376813 bp Feature: domain Description: PRK1 2451 Location: 33751 30-337681 3 bp Feature: gene Location: 3377441-3379258 bp Ori: KFL83107.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3377705-3378536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3377705-3378536 bp Feature: domain Description: Intron_maturas2 Location: 3378617-3378908 bp Feature: domain Description: Intron_maturas2 Location: 337861 7-3378908 bp Feature: domain Description: HNHc Note: nucleases Location: 3379055-3379232 bp Feature: domain Description: HNHc Note: nucleases Location: 3379055-3379232 bp Feature: gene Location: 3379874-3380440 bp Ori: KFL83399.1 Feature: domain Description: SAM_MT Location: 3379997-3380429 bp Feature: domain Description: SAM_MT Location: 3379997-3380429 bp Feature: gene Location: 3380490-3380924 bp Ori: KFL82920.1 Feature: domain Description: YphP_YqiW Location: 3380514-3380922 bp Feature: domain Description: YphP_YqiW Location: 338051 4-3380922 bp Feature: gene Location: 4453125-4454171 bp Ori: KFL80697.1 Gene: dcm Feature: domain Description: Cyt_C5_DNA_methylase Location: 4453134-4454148 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 44531 34-44541 48 bp Feature: gene Location: 4454168-4455574 bp Ori: KFL81086.1 Gene: dcm Feature: domain Description: Dcm Location: 4454432-4455551 bp Feature: domain Description: Dcm Location: 4454432-4455551 bp Feature: gene Location: 4456565-4456948 bp Ori: KFL81065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4456568-4456655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4456568-4456655 bp Feature: domain Description: GIIM Note: maturase Location: 4456736-4456940 bp Feature: domain Description: GIIM Note: maturase Location: 4456736-4456940 bp Feature: gene Location: 4456982-4457257 bp Ori: KFL81284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4457009-4457252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4457009-4457252 bp Feature: gene Location: 4457557-4457970 bp Ori: KFL81104.1 Feature: domain Description: COG1787 Location: 4457596-4457953 bp Feature: domain Description: COG1 787 Location: 4457596-4457953 bp Feature: gene Location: 4457918-4458097 bp Feature: gene Location: 4554633-4554977 bp Ori: KFL81067.1 Feature: domain Description: HxlR Location: 4554684-4554966 bp Feature: domain Description: HxlR Location: 4554684-4554966 bp Feature: gene Location: 4555617-4556030 bp Ori: KFL81211.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 4555620-4556016 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 4555620-455601 6 bp Feature: gene Location: 4556270-4558102 bp Ori: KFL80729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4556570-4557275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4556570-4557275 bp Feature: domain Description: HNHc Note: nucleases Location: 4557854-4557986 bp Feature: domain Description: HNHc Note: nucleases Location: 4557854-4557986 bp Feature: gene Location: 4558818-4558931 bp Ori: KFL81388.1 Gene: yqgX Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 4558833-4558920 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 4558833-4558920 bp Feature: gene Location: 4559322-4559633 bp Ori: KFL81205.1 Feature: domain Description: PRK12856 Location: 4559325-4559631 bp Feature: domain Description: PRK1 2856 Location: 4559325-4559631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08068 (transaminase; Reviewed), nitrilase_5 (cd07583), RVT-GII, HNHc (smart00507), mtnK (PRK09550), mtnA (PRK05720), HTH_MlrA-like_sg1 (cd04764), DUF3967 (pfam13152), Intron_maturas2 (pfam01348), ComJ (pfam11033)
caa3_CtaG (TIGR02737), amiF (PRK13287), group_II_RT_mat (TIGR04416), B_ant_repeat (TIGR01451), PBP2_OppA (cd08504), Cfa (COG2230), UbiE (COG2226), DUF4430 (pfam14478), EcfT (COG0619), ABC_cobalt_CbiO_domain1 (cd03225)
ECF-ribofla_trS (pfam07155), Methyltransf_31 (pfam13847), PRK12451 (arginyl-tRNA synthetase; Reviewed), SAM_MT (pfam04445), YphP_YqiW (TIGR04191), Cyt_C5_DNA_methylase (cl30459), Dcm (COG0270), GIIM (pfam08388), COG1787 (Endonuclease, HJR/Mrr/RecB family ), HxlR (pfam01638)
TTHA1623-like_MBL-fold (cd16322), metallo-hydrolase-like_MBL-fold (cl23716), PRK12856 (hypothetical protein; Provisional)

Seq: KN050659.1 Bacillus cereus strain 13061 genomic scaffold scaffold4, whole genome shotgun sequence (254504 bp)
Overview 1 RT 1: 183503-190161 bp 2 RT 2: 203640-208394 bp 3 RT 3: 232069-239470 bp Neighborhood of RT #1 [183503, 190161] HTH_XRE RVT-GII GIIM HNHc DUF3854 Neighborhood of RT #2 [203640, 208394] PRTRC_A E1_enzyme_family RVT-GII HNHc Neighborhood of RT #3 [232069, 239470] DEXXQc_Upf1-like KOG1803 nuc_hydro RVT_N RVT-GII GIIM Feature: gene Location: 183503-183727 bp Ori: KFL85502.1 Feature: domain Description: HTH_XRE Location: 183554-183692 bp Feature: domain Description: HTH_XRE Location: 183554-183692 bp Feature: gene Location: 183729-185279 bp Feature: gene Location: 186375-188162 bp Ori: KFL85542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186633-187332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186633-187332 bp Feature: domain Description: GIIM Note: maturase Location: 187416-187659 bp Feature: domain Description: GIIM Note: maturase Location: 187416-187659 bp Feature: domain Description: HNHc Note: nucleases Location: 187905-188043 bp Feature: domain Description: HNHc Note: nucleases Location: 187905-188043 bp Feature: gene Location: 188254-189438 bp Ori: KFL85532.1 Feature: domain Description: DUF3854 Location: 189085-189406 bp Feature: domain Description: DUF3854 Location: 189085-189406 bp Feature: gene Location: 189931-190161 bp Feature: gene Location: 203640-204635 bp Ori: KFL85520.1 Feature: domain Description: PRTRC_A Location: 204174-204528 bp Feature: domain Description: PRTRC_A Location: 2 04174-2 0452 8 bp Feature: gene Location: 204632-205033 bp Ori: KFL85521.1 Feature: domain Description: E1_enzyme_family Location: 204680-205016 bp Feature: domain Description: E1_enzyme_family Location: 2 04680-2 05016 bp Feature: gene Location: 205733-207613 bp Ori: KFL85551.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206063-206792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 06063-2 06792 bp Feature: domain Description: HNHc Note: nucleases Location: 207350-207500 bp Feature: domain Description: HNHc Note: nucleases Location: 2 07350-2 07500 bp Feature: gene Location: 207701-208204 bp Feature: gene Location: 208266-208394 bp Feature: gene Location: 232069-234885 bp Ori: KFL85500.1 Feature: domain Description: DEXXQc_Upf1-like Location: 233128-234337 bp Feature: domain Description: DEXXQc_Upf1-like Location: 2 3312 8-2 34337 bp Feature: domain Description: KOG1803 Location: 234553-234871 bp Feature: domain Description: KOG1803 Location: 2 34553-2 34871 bp Feature: gene Location: 235318-236268 bp Ori: KFL85522.1 Feature: domain Description: nuc_hydro Location: 235333-236239 bp Feature: domain Description: nuc_hydro Location: 2 35333-2 362 39 bp Feature: gene Location: 237048-238634 bp Ori: KFL85533.1 Feature: domain Description: RVT_N Location: 237054-237267 bp Feature: domain Description: RVT_N Location: 2 37054-2 372 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237321-237981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3732 1-2 37981 bp Feature: domain Description: GIIM Note: maturase Location: 238050-238281 bp Feature: domain Description: GIIM Note: maturase Location: 2 38050-2 382 81 bp Feature: gene Location: 238835-239077 bp Feature: gene Location: 239243-239470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3854 (pfam12965), PRTRC_A (TIGR03735), E1_enzyme_family (cl22428), DEXXQc_Upf1-like (cd17934), KOG1803 (KOG1803, DNA helicase ), nuc_hydro (cl00226)
RVT_N (pfam13655)