myRT

myRT report for GCA_000744095.1_ASM74409v1

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Seq: JQLI01000001.1 Cupriavidus necator A5-1 K307DRAFT_scf7180000000052_quiver.1_C, whole genome shotgun sequence (4685690 bp)
Overview 1 RT 1: 246694-250904 bp 2 RT 2: 443342-448455 bp 3 RT 3: 970296-975150 bp 4 RT 4: 1006098-1015065 bp 5 RT 5: 1290489-1295362 bp 6 RT 6: 1401200-1406378 bp 7 RT 7: 3661653-3667228 bp 8 RT 8: 3968193-3976917 bp 9 RT 9: 4366825-4371808 bp Neighborhood of RT #1 [246694, 250904] P-type_ATPase_HM Hemerythrin RVT-GII Neighborhood of RT #2 [443342, 448544] COG3547 RVT-GII RVT-GII beta_CA_cladeB YbjT LysR Neighborhood of RT #3 [970296, 975152] Cupin_2 RVT_N RVT-GII GIIM COG3547 COG3558 Neighborhood of RT #4 [1006098, 1015097] DDE_Tnp_Tn3 Tnp_DNA_bind RVT-GII GIIM DUF4158 DDE_Tnp_Tn3 DUF4158 DDE_Tnp_Tn3 Neighborhood of RT #5 [1290489, 1295362] Dimer_Tnp_Tn5 RVT-GII GIIM Tnp_DNA_bind Neighborhood of RT #6 [1401200, 1406378] Cytochrom_C RVT-GII GIIM Neighborhood of RT #7 [3661653, 3667332] MFS_PcaK_like Dimer_Tnp_Tn5 RVT-GII GIIM Tnp_DNA_bind YcaC_related Neighborhood of RT #8 [3968193, 3976976] COG3666 DDE_Tnp_1_6 COG3547 RVT_N RVT-GII GIIM RVT-GII GIIM NorB Neighborhood of RT #9 [4366825, 4371858] GIIM RVT_N RVT-GII GIIM COG3547 HTH_1 PBP2_LTTR_aromatics_like_2 Feature: gene Location: 246694-247164 bp Feature: gene Location: 247133-249625 bp Feature: domain Description: P-type_ATPase_HM Location: 247361-249152 bp Feature: domain Description: P-type_ATPase_HM Location: 247361 -2491 52 bp Feature: domain Description: Hemerythrin Location: 249200-249596 bp Feature: domain Description: Hemerythrin Location: 249200-249596 bp Feature: gene Location: 250060-250392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250066-250312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250066-25031 2 bp Feature: gene Location: 250424-250609 bp Feature: gene Location: 250671-250904 bp Feature: gene Location: 443342-443872 bp Feature: domain Description: COG3547 Location: 443369-443831 bp Feature: domain Description: COG3547 Location: 443369-443831 bp Feature: gene Location: 443992-444261 bp Feature: gene Location: 444357-445001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444768-444999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444768-444999 bp Feature: gene Location: 445033-445836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445039-445456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445039-445456 bp Feature: gene Location: 446027-446551 bp Feature: domain Description: beta_CA_cladeB Location: 446048-446402 bp Feature: domain Description: beta_CA_cladeB Location: 446048-446402 bp Feature: gene Location: 446730-448544 bp Feature: domain Description: YbjT Location: 446733-447486 bp Feature: domain Description: YbjT Location: 446733-447486 bp Feature: domain Description: LysR Location: 447594-448455 bp Feature: domain Description: LysR Location: 447594-448455 bp Feature: gene Location: 970296-970739 bp Feature: domain Description: Cupin_2 Location: 970539-970710 bp Feature: domain Description: Cupin_2 Location: 970539-97071 0 bp Feature: gene Location: 972108-972236 bp Feature: gene Location: 972402-973901 bp Feature: domain Description: RVT_N Location: 972465-972699 bp Feature: domain Description: RVT_N Location: 972465-972699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972753-973395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972753-973395 bp Feature: domain Description: GIIM Note: maturase Location: 973446-973680 bp Feature: domain Description: GIIM Note: maturase Location: 973446-973680 bp Feature: gene Location: 973892-974377 bp Feature: domain Description: COG3547 Location: 973991-974366 bp Feature: domain Description: COG3547 Location: 973991 -974366 bp Feature: gene Location: 974670-975152 bp Feature: domain Description: COG3558 Location: 974697-975150 bp Feature: domain Description: COG3558 Location: 974697-9751 50 bp Feature: gene Location: 1006098-1006904 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1006104-1006812 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 0061 04-1 00681 2 bp Feature: gene Location: 1006833-1008005 bp Feature: domain Description: Tnp_DNA_bind Location: 1007070-1007241 bp Feature: domain Description: Tnp_DNA_bind Location: 1 007070-1 007241 bp Feature: gene Location: 1008510-1009817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008795-1009431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 008795-1 009431 bp Feature: domain Description: GIIM Note: maturase Location: 1009506-1009734 bp Feature: domain Description: GIIM Note: maturase Location: 1 009506-1 009734 bp Feature: gene Location: 1010321-1012555 bp Feature: domain Description: DUF4158 Location: 1010333-1010822 bp Feature: domain Description: DUF41 58 Location: 1 01 0333-1 01 0822 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1012070-1012523 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 01 2070-1 01 2523 bp Feature: gene Location: 1012665-1015097 bp Feature: domain Description: DUF4158 Location: 1012704-1013142 bp Feature: domain Description: DUF41 58 Location: 1 01 2704-1 01 31 42 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1014357-1015065 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 01 4357-1 01 5065 bp Feature: gene Location: 1290489-1290737 bp Feature: gene Location: 1291114-1291497 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1291210-1291459 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1 291 21 0-1 291 459 bp Feature: gene Location: 1291649-1292956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1291934-1292570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 291 934-1 292570 bp Feature: domain Description: GIIM Note: maturase Location: 1292645-1292873 bp Feature: domain Description: GIIM Note: maturase Location: 1 292645-1 292873 bp Feature: gene Location: 1293461-1294417 bp Feature: domain Description: Tnp_DNA_bind Location: 1293482-1293653 bp Feature: domain Description: Tnp_DNA_bind Location: 1 293482-1 293653 bp Feature: gene Location: 1294547-1295362 bp Feature: gene Location: 1401200-1402513 bp Feature: domain Description: Cytochrom_C Location: 1402193-1402511 bp Feature: domain Description: Cytochrom_C Location: 1 4021 93-1 40251 1 bp Feature: gene Location: 1402776-1403003 bp Feature: gene Location: 1403213-1403875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1403237-1403504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 403237-1 403504 bp Feature: domain Description: GIIM Note: maturase Location: 1403561-1403771 bp Feature: domain Description: GIIM Note: maturase Location: 1 403561 -1 403771 bp Feature: gene Location: 1404283-1405752 bp Feature: gene Location: 1405941-1406378 bp Feature: gene Location: 3661653-3663014 bp Feature: domain Description: MFS_PcaK_like Location: 3661722-3662946 bp Feature: domain Description: MFS_PcaK_like Location: 3661 722-3662946 bp Feature: gene Location: 3663095-3663583 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3663290-3663566 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3663290-3663566 bp Feature: gene Location: 3663636-3664943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663921-3664557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663921 -3664557 bp Feature: domain Description: GIIM Note: maturase Location: 3664632-3664860 bp Feature: domain Description: GIIM Note: maturase Location: 3664632-3664860 bp Feature: gene Location: 3665448-3666461 bp Feature: domain Description: Tnp_DNA_bind Location: 3665487-3665655 bp Feature: domain Description: Tnp_DNA_bind Location: 3665487-3665655 bp Feature: gene Location: 3666706-3667332 bp Feature: domain Description: YcaC_related Location: 3666748-3667228 bp Feature: domain Description: YcaC_related Location: 3666748-3667228 bp Feature: gene Location: 3968193-3969293 bp Feature: domain Description: COG3666 Location: 3968223-3968691 bp Feature: domain Description: COG3666 Location: 3968223-3968691 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3969099-3969258 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 3969099-3969258 bp Feature: gene Location: 3969441-3970316 bp Feature: domain Description: COG3547 Location: 3969444-3970272 bp Feature: domain Description: COG3547 Location: 3969444-3970272 bp Feature: gene Location: 3970508-3972007 bp Feature: domain Description: RVT_N Location: 3970571-3970805 bp Feature: domain Description: RVT_N Location: 3970571 -3970805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3970859-3971501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3970859-3971 501 bp Feature: domain Description: GIIM Note: maturase Location: 3971552-3971786 bp Feature: domain Description: GIIM Note: maturase Location: 3971 552-3971 786 bp Feature: gene Location: 3972173-3972301 bp Feature: gene Location: 3972799-3973443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3972802-3973024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3972802-3973024 bp Feature: domain Description: GIIM Note: maturase Location: 3973084-3973291 bp Feature: domain Description: GIIM Note: maturase Location: 3973084-3973291 bp Feature: gene Location: 3973974-3974312 bp Feature: gene Location: 3974688-3976976 bp Feature: domain Description: NorB Location: 3974700-3976917 bp Feature: domain Description: NorB Location: 3974700-397691 7 bp Feature: gene Location: 4366825-4367262 bp Feature: domain Description: GIIM Note: maturase Location: 4366903-4367110 bp Feature: domain Description: GIIM Note: maturase Location: 4366903-43671 1 0 bp Feature: gene Location: 4367760-4367888 bp Feature: gene Location: 4368054-4369553 bp Feature: domain Description: RVT_N Location: 4368117-4368351 bp Feature: domain Description: RVT_N Location: 43681 1 7-4368351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4368405-4369047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4368405-4369047 bp Feature: domain Description: GIIM Note: maturase Location: 4369098-4369332 bp Feature: domain Description: GIIM Note: maturase Location: 4369098-4369332 bp Feature: gene Location: 4369544-4370620 bp Feature: domain Description: COG3547 Location: 4369643-4370576 bp Feature: domain Description: COG3547 Location: 4369643-4370576 bp Feature: gene Location: 4370944-4371858 bp Feature: domain Description: HTH_1 Location: 4370953-4371130 bp Feature: domain Description: HTH_1 Location: 4370953-4371 1 30 bp Feature: domain Description: PBP2_LTTR_aromatics_like_2 Location: 4371220-4371808 bp Feature: domain Description: PBP2_LTTR_aromatics_like_2 Location: 4371 220-4371 808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_HM (cd07553), Hemerythrin (TIGR00058), RVT-GII, COG3547 (Transposase ), beta_CA_cladeB (cd00884), YbjT (COG0702), LysR (COG0583), Cupin_2 (pfam07883), RVT_N (pfam13655), GIIM (pfam08388)
COG3558 (Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily ), DDE_Tnp_Tn3 (pfam01526), Tnp_DNA_bind (pfam14706), DUF4158 (pfam13700), Dimer_Tnp_Tn5 (pfam02281), Cytochrom_C (pfam00034), MFS_PcaK_like (cd17365), YcaC_related (cd01012), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)
NorB (COG3256), HTH_1 (pfam00126), PBP2_LTTR_aromatics_like_2 (cd08448)

Seq: JQLI01000008.1 Cupriavidus necator A5-1 K307DRAFT_scf7180000000049_quiver_dupTrim_1601.8_C, whole genome shotgun sequence (4300546 bp)
Overview 1 RT 1: 104977-112711 bp 2 RT 2: 1172215-1179210 bp 3 RT 3: 2089092-2094838 bp Neighborhood of RT #1 [104977, 112800] CytC5 CytC5 Nterm_IS4 DDE_Tnp_1 RVT-GII GIIM RVT-GII GIIM PRK09249 Neighborhood of RT #2 [1172215, 1179224] HisM Tnp_DNA_bind RVT-GII GIIM Dimer_Tnp_Tn5 cya_phycin_syn Neighborhood of RT #3 [2089092, 2094838] TOMM_kin_cyc RVT-GII GIIM Feature: gene Location: 104977-105894 bp Feature: domain Description: CytC5 Location: 105127-105457 bp Feature: domain Description: CytC5 Location: 10512 7-105457 bp Feature: domain Description: CytC5 Location: 105538-105889 bp Feature: domain Description: CytC5 Location: 105538-105889 bp Feature: gene Location: 106015-106962 bp Feature: domain Description: Nterm_IS4 Location: 106063-106339 bp Feature: domain Description: Nterm_IS4 Location: 106063-106339 bp Feature: domain Description: DDE_Tnp_1 Location: 106405-106948 bp Feature: domain Description: DDE_Tnp_1 Location: 106405-106948 bp Feature: gene Location: 107467-108774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107752-108388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107752 -108388 bp Feature: domain Description: GIIM Note: maturase Location: 108463-108691 bp Feature: domain Description: GIIM Note: maturase Location: 108463-108691 bp Feature: gene Location: 109442-110749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109727-110363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10972 7-110363 bp Feature: domain Description: GIIM Note: maturase Location: 110438-110666 bp Feature: domain Description: GIIM Note: maturase Location: 110438-110666 bp Feature: gene Location: 110928-111281 bp Feature: gene Location: 111337-112800 bp Feature: domain Description: PRK09249 Location: 111385-112711 bp Feature: domain Description: PRK092 49 Location: 111385-112 711 bp Feature: gene Location: 1172215-1172910 bp Feature: domain Description: HisM Location: 1172242-1172893 bp Feature: domain Description: HisM Location: 1172 2 42 -1172 893 bp Feature: gene Location: 1173086-1174099 bp Feature: domain Description: Tnp_DNA_bind Location: 1173125-1173293 bp Feature: domain Description: Tnp_DNA_bind Location: 117312 5-11732 93 bp Feature: gene Location: 1174604-1175911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174889-1175525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174889-117552 5 bp Feature: domain Description: GIIM Note: maturase Location: 1175600-1175828 bp Feature: domain Description: GIIM Note: maturase Location: 1175600-117582 8 bp Feature: gene Location: 1175964-1176452 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1176159-1176435 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1176159-1176435 bp Feature: gene Location: 1176654-1179224 bp Feature: domain Description: cya_phycin_syn Location: 1176660-1179210 bp Feature: domain Description: cya_phycin_syn Location: 1176660-11792 10 bp Feature: gene Location: 2089092-2089310 bp Feature: gene Location: 2089771-2091552 bp Feature: domain Description: TOMM_kin_cyc Location: 2089834-2091418 bp Feature: domain Description: TOMM_kin_cyc Location: 2 089834-2 091418 bp Feature: gene Location: 2091985-2093292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2092270-2092906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 092 2 70-2 092 906 bp Feature: domain Description: GIIM Note: maturase Location: 2092981-2093209 bp Feature: domain Description: GIIM Note: maturase Location: 2 092 981-2 0932 09 bp Feature: gene Location: 2093345-2094052 bp Feature: gene Location: 2094152-2094838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytC5 (COG3245), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), PRK09249 (coproporphyrinogen dehydrogenase), HisM (COG0765), Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281), cya_phycin_syn (TIGR02068)
TOMM_kin_cyc (TIGR03903)