myRT

myRT report for GCA_000744375.1_ASM74437v1

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Seq: JQLU01000001.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_deg7180000000011_dupTrim_9640.1_C, whole genome shotgun sequence (64498 bp)
Overview 1 RT 1: 46508-52971 bp Neighborhood of RT #1 [46508, 53030] PinE PRK07726 RVT-GII HNHc PRK07726 BcsQ Feature: gene Location: 46508-47116 bp Feature: domain Description: PinE Location: 46511-47090 bp Feature: domain Description: PinE Location: 4651 1 -47090 bp Feature: gene Location: 47113-47475 bp Feature: domain Description: PRK07726 Location: 47122-47455 bp Feature: domain Description: PRK07726 Location: 471 22-47455 bp Feature: gene Location: 48212-50098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48527-49265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48527-49265 bp Feature: domain Description: HNHc Note: nucleases Location: 49814-49982 bp Feature: domain Description: HNHc Note: nucleases Location: 4981 4-49982 bp Feature: gene Location: 50319-52031 bp Feature: domain Description: PRK07726 Location: 50325-51879 bp Feature: domain Description: PRK07726 Location: 50325-51 879 bp Feature: gene Location: 52134-53030 bp Feature: domain Description: BcsQ Location: 52266-52971 bp Feature: domain Description: BcsQ Location: 52266-52971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507), BcsQ (COG1192)

Seq: JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence (3037612 bp)
Overview 1 RT 1: 1526325-1531223 bp 2 RT 2: 2295659-2299691 bp Neighborhood of RT #1 [1526325, 1531426] RsuA M20_ACY1L2-like RVT-Retrons RVT-Retrons HTH_3 TPR TPR_2 Neighborhood of RT #2 [2295659, 2299897] LXG RVT-UG17 Glyco_hydrolase_16 RicinB_lectin_2 Feature: gene Location: 1526325-1527080 bp Feature: domain Description: RsuA Location: 1526364-1527063 bp Feature: domain Description: RsuA Location: 152 6364-152 7063 bp Feature: gene Location: 1527488-1528687 bp Feature: domain Description: M20_ACY1L2-like Location: 1527530-1528610 bp Feature: domain Description: M2 0_ACY1L2 -like Location: 152 7530-152 8610 bp Feature: gene Location: 1529051-1529323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1529153-1529294 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 9153-152 92 94 bp Feature: gene Location: 1529364-1529759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1529397-1529694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 9397-152 9694 bp Feature: gene Location: 1529802-1529978 bp Feature: gene Location: 1530524-1531426 bp Feature: domain Description: HTH_3 Location: 1530554-1530710 bp Feature: domain Description: HTH_3 Location: 1530554-1530710 bp Feature: domain Description: TPR Location: 1530770-1531064 bp Feature: domain Description: TPR Location: 1530770-1531064 bp Feature: domain Description: TPR_2 Location: 1531127-1531223 bp Feature: domain Description: TPR_2 Location: 153112 7-15312 2 3 bp Feature: gene Location: 2295659-2297128 bp Feature: domain Description: LXG Location: 2295704-2296169 bp Feature: domain Description: LXG Location: 2 2 95704-2 2 96169 bp Feature: gene Location: 2297137-2297541 bp Feature: gene Location: 2297637-2298059 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2297661-2298054 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 2 97661-2 2 98054 bp Feature: gene Location: 2298040-2298306 bp Feature: gene Location: 2298629-2299897 bp Feature: domain Description: Glyco_hydrolase_16 Location: 2298767-2299493 bp Feature: domain Description: Glyco_hydrolase_16 Location: 2 2 98767-2 2 99493 bp Feature: domain Description: RicinB_lectin_2 Location: 2299526-2299691 bp Feature: domain Description: RicinB_lectin_2 Location: 2 2 9952 6-2 2 99691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsuA (COG1187), M20_ACY1L2-like (cd05672), RVT-Retrons, HTH_3 (pfam01381), TPR (smart00028), TPR_2 (pfam07719), LXG (pfam04740), RVT-UG17, Glyco_hydrolase_16 (cd00413), RicinB_lectin_2 (pfam14200)