myRT

myRT report for GCA_000744825.1_ASM74482v1

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Seq: JQMR01000001.1 Carnobacterium mobile DSM 4848 strain MT37L BR87DRAFT_scf7180000000018_quiver_dupTrim_8950.1_C, whole genome shotgun sequence (2553405 bp)
Overview 1 RT 1: 401341-406953 bp 2 RT 2: 496078-501665 bp 3 RT 3: 829154-834438 bp 4 RT 4: 1134454-1137528 bp 5 RT 5: 1521135-1526015 bp 6 RT 6: 2046511-2055001 bp 7 RT 7: 2316118-2320810 bp Neighborhood of RT #1 [401341, 406953] infB IF-2 PRK13818 RVT-GII Neighborhood of RT #2 [496078, 501715] 2_5_ligase RVT-GII PRK05427 LysR Neighborhood of RT #3 [829154, 834704] ileS RVT-GII DivIVA Neighborhood of RT #4 [1134454, 1137542] RVT-GII LolD Neighborhood of RT #5 [1521135, 1526026] GATase1_PfpI_like RVT-GII arb Neighborhood of RT #6 [2046511, 2055015] PRK15098 Uup RVT-GII PBP2_OppA Neighborhood of RT #7 [2316118, 2320818] NagC SGNH_hydrolase_like_2 RVT-GII Peptidase_M19 Feature: gene Location: 401341-403647 bp Feature: domain Description: infB Location: 401344-401716 bp Feature: domain Description: infB Location: 401 344-401 71 6 bp Feature: domain Description: IF-2 Location: 401893-403642 bp Feature: domain Description: IF-2 Location: 401 893-403642 bp Feature: gene Location: 403700-404047 bp Feature: domain Description: PRK13818 Location: 403712-404042 bp Feature: domain Description: PRK1 381 8 Location: 40371 2-404042 bp Feature: gene Location: 404479-405516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404818-405433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40481 8-405433 bp Feature: gene Location: 405609-405893 bp Feature: gene Location: 406357-406953 bp Feature: gene Location: 496078-496653 bp Feature: domain Description: 2_5_ligase Location: 496120-496639 bp Feature: domain Description: 2_5_ligase Location: 4961 20-496639 bp Feature: gene Location: 497923-498207 bp Feature: gene Location: 498300-499337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498639-499254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498639-499254 bp Feature: gene Location: 499788-500741 bp Feature: domain Description: PRK05427 Location: 499815-500736 bp Feature: domain Description: PRK05427 Location: 49981 5-500736 bp Feature: gene Location: 500768-501715 bp Feature: domain Description: LysR Location: 500804-501665 bp Feature: domain Description: LysR Location: 500804-501 665 bp Feature: gene Location: 829154-831934 bp Feature: domain Description: ileS Location: 829157-831899 bp Feature: domain Description: ileS Location: 8291 57-831 899 bp Feature: gene Location: 832082-832366 bp Feature: gene Location: 832459-833403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832705-833320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832705-833320 bp Feature: gene Location: 833891-834019 bp Feature: gene Location: 834024-834704 bp Feature: domain Description: DivIVA Location: 834048-834438 bp Feature: domain Description: DivIVA Location: 834048-834438 bp Feature: gene Location: 1134454-1134582 bp Feature: gene Location: 1134667-1134951 bp Feature: gene Location: 1135044-1136081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135383-1135998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 35383-1 1 35998 bp Feature: gene Location: 1136565-1136717 bp Feature: gene Location: 1136874-1137542 bp Feature: domain Description: LolD Location: 1136886-1137528 bp Feature: domain Description: LolD Location: 1 1 36886-1 1 37528 bp Feature: gene Location: 1521135-1521650 bp Feature: domain Description: GATase1_PfpI_like Location: 1521147-1521639 bp Feature: domain Description: GATase1 _PfpI_like Location: 1 521 1 47-1 521 639 bp Feature: gene Location: 1522097-1522315 bp Feature: gene Location: 1522572-1523609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522911-1523526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52291 1 -1 523526 bp Feature: gene Location: 1523702-1523986 bp Feature: gene Location: 1524599-1526026 bp Feature: domain Description: arb Location: 1524614-1526015 bp Feature: domain Description: arb Location: 1 52461 4-1 52601 5 bp Feature: gene Location: 2046511-2048751 bp Feature: domain Description: PRK15098 Location: 2046538-2048743 bp Feature: domain Description: PRK1 5098 Location: 2046538-2048743 bp Feature: gene Location: 2049339-2050964 bp Feature: domain Description: Uup Location: 2049342-2050947 bp Feature: domain Description: Uup Location: 2049342-2050947 bp Feature: gene Location: 2051751-2052788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2052090-2052705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2052090-2052705 bp Feature: gene Location: 2052881-2053165 bp Feature: gene Location: 2053381-2055015 bp Feature: domain Description: PBP2_OppA Location: 2053495-2055001 bp Feature: domain Description: PBP2_OppA Location: 2053495-2055001 bp Feature: gene Location: 2316118-2316996 bp Feature: domain Description: NagC Location: 2316124-2316991 bp Feature: domain Description: NagC Location: 231 61 24-231 6991 bp Feature: gene Location: 2317012-2317647 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 2317033-2317636 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 231 7033-231 7636 bp Feature: gene Location: 2318308-2319345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2318647-2319262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 8647-231 9262 bp Feature: gene Location: 2319438-2319722 bp Feature: gene Location: 2319883-2320818 bp Feature: domain Description: Peptidase_M19 Location: 2319892-2320810 bp Feature: domain Description: Peptidase_M1 9 Location: 231 9892-232081 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT infB (PRK05306), IF-2 (TIGR00487), PRK13818 (ribosome-binding factor A; Provisional), RVT-GII, 2_5_ligase (TIGR02258), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional), LysR (COG0583), ileS (TIGR00392), DivIVA (pfam05103), LolD (COG1136)
GATase1_PfpI_like (cd03134), arb (PRK09593), PRK15098 (beta-glucosidase BglX), Uup (COG0488), PBP2_OppA (cd08504), NagC (COG1940), SGNH_hydrolase_like_2 (cd01834), Peptidase_M19 (pfam01244)