myRT

myRT report for GCA_000745015.1_ASM74501v1

Download annotations/find similar RTs

Seq: JQNA01000001.1 Burkholderia sp. 9120 FA94DRAFT_unitig_1_quiver.1_C, whole genome shotgun sequence (1878734 bp)
Overview 1 RT 1: 1399281-1405970 bp Neighborhood of RT #1 [1399281, 1406020] PRK09302 COG4584 RVT-GII GIIM BaeS CheY Feature: gene Location: 1399281-1400705 bp Feature: domain Description: PRK09302 Location: 1399287-1400667 bp Feature: domain Description: PRK09302 Location: 1 399287-1 400667 bp Feature: gene Location: 1401098-1402132 bp Feature: domain Description: COG4584 Location: 1401146-1401923 bp Feature: domain Description: COG4584 Location: 1 401 1 46-1 401 923 bp Feature: gene Location: 1402212-1403423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402461-1403124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 402461 -1 4031 24 bp Feature: domain Description: GIIM Note: maturase Location: 1403193-1403394 bp Feature: domain Description: GIIM Note: maturase Location: 1 4031 93-1 403394 bp Feature: gene Location: 1404180-1405409 bp Feature: domain Description: BaeS Location: 1404510-1405395 bp Feature: domain Description: BaeS Location: 1 40451 0-1 405395 bp Feature: gene Location: 1405640-1406020 bp Feature: domain Description: CheY Location: 1405664-1405970 bp Feature: domain Description: CheY Location: 1 405664-1 405970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09302 (circadian clock protein KaiC; Reviewed), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), BaeS (COG0642), CheY (COG0784)

Seq: JQNA01000002.1 Burkholderia sp. 9120 FA94DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence (6576898 bp)
Overview 1 RT 1: 1031499-1038807 bp 2 RT 2: 1859239-1862733 bp 3 RT 3: 2514666-2520297 bp Neighborhood of RT #1 [1031499, 1038992] VgrG COG4253 RVT-UG2 HTH_XRE ImmA Neighborhood of RT #2 [1859239, 1862765] IS5 RVT_N RVT-GII GIIM DUF772 BON BON Neighborhood of RT #3 [2514666, 2520482] 2A0305 AraC GyrI-like RVT-Retrons YdcF-like YecT Feature: gene Location: 1031499-1034036 bp Feature: domain Description: VgrG Location: 1031556-1033302 bp Feature: domain Description: VgrG Location: 1031556-1033302 bp Feature: domain Description: COG4253 Location: 1033323-1033947 bp Feature: domain Description: COG42 53 Location: 103332 3-1033947 bp Feature: gene Location: 1034492-1035361 bp Feature: gene Location: 1035398-1036669 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1035596-1036379 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1035596-1036379 bp Feature: gene Location: 1037332-1037742 bp Feature: gene Location: 1037910-1038992 bp Feature: domain Description: HTH_XRE Location: 1037925-1038090 bp Feature: domain Description: HTH_XRE Location: 103792 5-1038090 bp Feature: domain Description: ImmA Location: 1038285-1038807 bp Feature: domain Description: ImmA Location: 10382 85-1038807 bp Feature: gene Location: 1859239-1859481 bp Feature: domain Description: IS5 Location: 1859242-1859470 bp Feature: domain Description: IS5 Location: 18592 42 -1859470 bp Feature: gene Location: 1859488-1859670 bp Feature: gene Location: 1859774-1861246 bp Feature: domain Description: RVT_N Location: 1859849-1860089 bp Feature: domain Description: RVT_N Location: 1859849-1860089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860137-1860779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860137-1860779 bp Feature: domain Description: GIIM Note: maturase Location: 1860830-1861064 bp Feature: domain Description: GIIM Note: maturase Location: 1860830-1861064 bp Feature: gene Location: 1862018-1862389 bp Feature: domain Description: DUF772 Location: 1862159-1862351 bp Feature: domain Description: DUF772 Location: 1862 159-1862 351 bp Feature: gene Location: 1862433-1862765 bp Feature: domain Description: BON Location: 1862439-1862538 bp Feature: domain Description: BON Location: 1862 439-1862 538 bp Feature: domain Description: BON Location: 1862568-1862733 bp Feature: domain Description: BON Location: 1862 568-1862 733 bp Feature: gene Location: 2514666-2516069 bp Feature: domain Description: 2A0305 Location: 2514711-2516055 bp Feature: domain Description: 2 A0305 Location: 2 514711-2 516055 bp Feature: gene Location: 2516319-2517185 bp Feature: domain Description: AraC Location: 2516337-2516664 bp Feature: domain Description: AraC Location: 2 516337-2 516664 bp Feature: domain Description: GyrI-like Location: 2516718-2517180 bp Feature: domain Description: GyrI-like Location: 2 516718-2 517180 bp Feature: gene Location: 2517770-2519143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2518235-2518874 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5182 35-2 518874 bp Feature: gene Location: 2519213-2519773 bp Feature: domain Description: YdcF-like Location: 2519312-2519705 bp Feature: domain Description: YdcF-like Location: 2 519312 -2 519705 bp Feature: gene Location: 2520018-2520482 bp Feature: domain Description: YecT Location: 2520084-2520297 bp Feature: domain Description: YecT Location: 2 52 0084-2 52 02 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VgrG (COG3501), COG4253 (Uncharacterized conserved protein, DUF2345 family ), RVT-UG2, HTH_XRE (smart00530), ImmA (COG2856), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)
BON (smart00749), 2A0305 (TIGR00908), AraC (COG2207), GyrI-like (pfam06445), RVT-Retrons, YdcF-like (cl00630), YecT (COG3755)