myRT

myRT report for GCA_000745315.1_ASM74531v1

Download annotations/find similar RTs

Seq: JQNQ01000001.1 Salegentibacter sp. Hel_I_6 FG27DRAFT_unitig_0_quiver_dupTrim_7536.1_C, whole genome shotgun sequence (4212161 bp)
Overview 1 RT 1: 146860-160840 bp 2 RT 2: 374282-377798 bp 3 RT 3: 795613-806248 bp 4 RT 4: 817965-824878 bp 5 RT 5: 1060082-1065913 bp 6 RT 6: 3209430-3215343 bp 7 RT 7: 3259270-3261695 bp 8 RT 8: 3268701-3275870 bp 9 RT 9: 3282901-3285842 bp 10 RT 10: 3290920-3294969 bp 11 RT 11: 3313388-3318596 bp 12 RT 12: 3804907-3811185 bp 13 RT 13: 3850886-3854883 bp 14 RT 14: 3857337-3866280 bp 15 RT 15: 3883577-3889344 bp Neighborhood of RT #1 [146860, 160896] RVT-GII GIIM HTH_ARAC NmrA_TMR_like_1_SDR_a RVT-GII GIIM Ribonuc_L-PSP Crp RVT-GII GIIM INT_IntI_C Neighborhood of RT #2 [374282, 377851] GIIM RVT-GII IS285 Neighborhood of RT #3 [795613, 806248] RVT-GII GIIM RpoE RVT-GII GIIM HTH_21 rve_3 HTH_Tnp_1 RVT-GII GIIM Neighborhood of RT #4 [817965, 824878] Lhr RVT-GII GIIM F-BAR_GAS7 F-BAR_GAS7 Neighborhood of RT #5 [1060082, 1065972] metH YhfA RVT-Retrons TrxB CysG2 Neighborhood of RT #6 [3209430, 3215343] Beta-lactamase DUF3471 RVT-GII GIIM Neighborhood of RT #7 [3259270, 3261695] RVT-GII GIIM Neighborhood of RT #8 [3268701, 3275870] RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #9 [3282901, 3285842] RVT-GII GIIM Neighborhood of RT #10 [3290920, 3295001] INT_IntI_C RVT-GII GIIM HpaA Neighborhood of RT #11 [3313388, 3318596] RVT-GII GIIM retropepsin_like_bacteria PDZ_metalloprotease Neighborhood of RT #12 [3804907, 3811185] GSDH Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons Neighborhood of RT #13 [3850886, 3854936] S2P-M50 RVT-GII GIIM HTH_ARAC Neighborhood of RT #14 [3857337, 3866280] RVT-GII GIIM TlpA_like_family RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #15 [3883577, 3889499] HTH_LUXR RVT-GII GIIM Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Bacova_04320_like Feature: gene Location: 146860-147429 bp Feature: gene Location: 147815-148009 bp Feature: gene Location: 148117-149379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148312-148927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4831 2-1 48927 bp Feature: domain Description: GIIM Note: maturase Location: 149005-149212 bp Feature: domain Description: GIIM Note: maturase Location: 1 49005-1 4921 2 bp Feature: gene Location: 149491-149898 bp Feature: gene Location: 150188-151102 bp Feature: domain Description: HTH_ARAC Location: 150845-151088 bp Feature: domain Description: HTH_ARAC Location: 1 50845-1 51 088 bp Feature: gene Location: 151112-152014 bp Feature: domain Description: NmrA_TMR_like_1_SDR_a Location: 151151-151916 bp Feature: domain Description: NmrA_TMR_like_1 _SDR_a Location: 1 51 1 51 -1 51 91 6 bp Feature: gene Location: 152446-152640 bp Feature: gene Location: 152748-154010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152943-153558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52943-1 53558 bp Feature: domain Description: GIIM Note: maturase Location: 153636-153843 bp Feature: domain Description: GIIM Note: maturase Location: 1 53636-1 53843 bp Feature: gene Location: 154144-154617 bp Feature: domain Description: Ribonuc_L-PSP Location: 154273-154612 bp Feature: domain Description: Ribonuc_L-PSP Location: 1 54273-1 5461 2 bp Feature: gene Location: 154707-155270 bp Feature: domain Description: Crp Location: 154749-155262 bp Feature: domain Description: Crp Location: 1 54749-1 55262 bp Feature: gene Location: 155473-156696 bp Feature: gene Location: 157131-157325 bp Feature: gene Location: 157433-158695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157628-158243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57628-1 58243 bp Feature: domain Description: GIIM Note: maturase Location: 158321-158528 bp Feature: domain Description: GIIM Note: maturase Location: 1 58321 -1 58528 bp Feature: gene Location: 158787-159758 bp Feature: gene Location: 160141-160896 bp Feature: domain Description: INT_IntI_C Location: 160342-160840 bp Feature: domain Description: INT_IntI_C Location: 1 60342-1 60840 bp Feature: gene Location: 374282-374614 bp Feature: gene Location: 374723-375169 bp Feature: domain Description: GIIM Note: maturase Location: 374792-375002 bp Feature: domain Description: GIIM Note: maturase Location: 374792-375002 bp Feature: gene Location: 375302-375985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375497-375983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375497-375983 bp Feature: gene Location: 376094-376288 bp Feature: gene Location: 377237-377851 bp Feature: domain Description: IS285 Location: 377303-377798 bp Feature: domain Description: IS285 Location: 377303-377798 bp Feature: gene Location: 795613-796278 bp Feature: gene Location: 796784-796954 bp Feature: gene Location: 797018-798280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797213-797828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79721 3-797828 bp Feature: domain Description: GIIM Note: maturase Location: 797906-798113 bp Feature: domain Description: GIIM Note: maturase Location: 797906-7981 1 3 bp Feature: gene Location: 798388-798582 bp Feature: gene Location: 799010-799513 bp Feature: domain Description: RpoE Location: 799019-799505 bp Feature: domain Description: RpoE Location: 79901 9-799505 bp Feature: gene Location: 799510-800106 bp Feature: gene Location: 800110-800283 bp Feature: gene Location: 800347-801441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800374-800989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800374-800989 bp Feature: domain Description: GIIM Note: maturase Location: 801064-801274 bp Feature: domain Description: GIIM Note: maturase Location: 801 064-801 274 bp Feature: gene Location: 801550-802341 bp Feature: domain Description: HTH_21 Location: 801616-801760 bp Feature: domain Description: HTH_21 Location: 801 61 6-801 760 bp Feature: domain Description: rve_3 Location: 802060-802255 bp Feature: domain Description: rve_3 Location: 802060-802255 bp Feature: gene Location: 802416-802682 bp Feature: domain Description: HTH_Tnp_1 Location: 802422-802629 bp Feature: domain Description: HTH_Tnp_1 Location: 802422-802629 bp Feature: gene Location: 802933-803127 bp Feature: gene Location: 803478-804020 bp Feature: gene Location: 804112-805374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804307-804922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804307-804922 bp Feature: domain Description: GIIM Note: maturase Location: 805000-805207 bp Feature: domain Description: GIIM Note: maturase Location: 805000-805207 bp Feature: gene Location: 805482-805676 bp Feature: gene Location: 806054-806248 bp Feature: gene Location: 817965-820100 bp Feature: domain Description: Lhr Location: 817971-819915 bp Feature: domain Description: Lhr Location: 81 7971 -81 991 5 bp Feature: gene Location: 820345-820482 bp Feature: gene Location: 821253-822515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821466-822132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 466-8221 32 bp Feature: domain Description: GIIM Note: maturase Location: 822219-822432 bp Feature: domain Description: GIIM Note: maturase Location: 82221 9-822432 bp Feature: gene Location: 823329-823853 bp Feature: domain Description: F-BAR_GAS7 Location: 823389-823551 bp Feature: domain Description: F-BAR_GAS7 Location: 823389-823551 bp Feature: domain Description: F-BAR_GAS7 Location: 823596-823773 bp Feature: domain Description: F-BAR_GAS7 Location: 823596-823773 bp Feature: gene Location: 823955-824878 bp Feature: gene Location: 1060082-1061098 bp Feature: domain Description: metH Location: 1060088-1061084 bp Feature: domain Description: metH Location: 1 060088-1 061 084 bp Feature: gene Location: 1061446-1061868 bp Feature: domain Description: YhfA Location: 1061449-1061848 bp Feature: domain Description: YhfA Location: 1 061 449-1 061 848 bp Feature: gene Location: 1062309-1064087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1062516-1063095 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 06251 6-1 063095 bp Feature: gene Location: 1064325-1065386 bp Feature: domain Description: TrxB Location: 1064328-1065288 bp Feature: domain Description: TrxB Location: 1 064328-1 065288 bp Feature: gene Location: 1065379-1065972 bp Feature: domain Description: CysG2 Location: 1065400-1065913 bp Feature: domain Description: CysG2 Location: 1 065400-1 06591 3 bp Feature: gene Location: 3209430-3211001 bp Feature: domain Description: Beta-lactamase Location: 3209523-3210516 bp Feature: domain Description: Beta-lactamase Location: 3209523-321 051 6 bp Feature: domain Description: DUF3471 Location: 3210696-3210981 bp Feature: domain Description: DUF3471 Location: 321 0696-321 0981 bp Feature: gene Location: 3211533-3211727 bp Feature: gene Location: 3211836-3213098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3212031-3212646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 2031 -321 2646 bp Feature: domain Description: GIIM Note: maturase Location: 3212721-3212931 bp Feature: domain Description: GIIM Note: maturase Location: 321 2721 -321 2931 bp Feature: gene Location: 3213190-3214182 bp Feature: gene Location: 3214498-3215343 bp Feature: gene Location: 3259270-3259410 bp Feature: gene Location: 3259578-3260840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3259773-3260388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3259773-3260388 bp Feature: domain Description: GIIM Note: maturase Location: 3260466-3260673 bp Feature: domain Description: GIIM Note: maturase Location: 3260466-3260673 bp Feature: gene Location: 3260948-3261142 bp Feature: gene Location: 3261555-3261695 bp Feature: gene Location: 3268701-3268850 bp Feature: gene Location: 3269085-3269699 bp Feature: gene Location: 3269806-3271068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270001-3270616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270001 -327061 6 bp Feature: domain Description: GIIM Note: maturase Location: 3270694-3270901 bp Feature: domain Description: GIIM Note: maturase Location: 3270694-3270901 bp Feature: gene Location: 3271176-3271370 bp Feature: gene Location: 3271725-3272231 bp Feature: gene Location: 3272386-3272793 bp Feature: gene Location: 3272898-3274160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273093-3273708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273093-3273708 bp Feature: domain Description: GIIM Note: maturase Location: 3273786-3273993 bp Feature: domain Description: GIIM Note: maturase Location: 3273786-3273993 bp Feature: gene Location: 3274268-3274462 bp Feature: gene Location: 3275250-3275870 bp Feature: gene Location: 3282901-3283197 bp Feature: gene Location: 3283437-3283655 bp Feature: gene Location: 3283857-3285119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284052-3284667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284052-3284667 bp Feature: domain Description: GIIM Note: maturase Location: 3284742-3284952 bp Feature: domain Description: GIIM Note: maturase Location: 3284742-3284952 bp Feature: gene Location: 3285228-3285422 bp Feature: gene Location: 3285636-3285842 bp Feature: gene Location: 3290920-3291093 bp Feature: gene Location: 3291150-3291905 bp Feature: domain Description: INT_IntI_C Location: 3291351-3291849 bp Feature: domain Description: INT_IntI_C Location: 3291 351 -3291 849 bp Feature: gene Location: 3292228-3293490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3292423-3293038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3292423-3293038 bp Feature: domain Description: GIIM Note: maturase Location: 3293116-3293323 bp Feature: domain Description: GIIM Note: maturase Location: 32931 1 6-3293323 bp Feature: gene Location: 3293598-3293792 bp Feature: gene Location: 3294138-3295001 bp Feature: domain Description: HpaA Location: 3294171-3294969 bp Feature: domain Description: HpaA Location: 32941 71 -3294969 bp Feature: gene Location: 3313388-3314314 bp Feature: gene Location: 3314655-3314849 bp Feature: gene Location: 3314957-3316219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3315152-3315767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 51 52-331 5767 bp Feature: domain Description: GIIM Note: maturase Location: 3315845-3316052 bp Feature: domain Description: GIIM Note: maturase Location: 331 5845-331 6052 bp Feature: gene Location: 3316311-3317516 bp Feature: domain Description: retropepsin_like_bacteria Location: 3316500-3316791 bp Feature: domain Description: retropepsin_like_bacteria Location: 331 6500-331 6791 bp Feature: domain Description: PDZ_metalloprotease Location: 3317358-3317493 bp Feature: domain Description: PDZ_metalloprotease Location: 331 7358-331 7493 bp Feature: gene Location: 3317703-3318596 bp Feature: gene Location: 3804907-3806106 bp Feature: domain Description: GSDH Location: 3805111-3806062 bp Feature: domain Description: GSDH Location: 38051 1 1 -3806062 bp Feature: gene Location: 3806691-3807890 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3806727-3806976 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3806727-3806976 bp Feature: domain Description: Phage_int_SAM_5 Location: 3807030-3807321 bp Feature: domain Description: Phage_int_SAM_5 Location: 3807030-3807321 bp Feature: domain Description: INTN1_C_like Location: 3807366-3807852 bp Feature: domain Description: INTN1 _C_like Location: 3807366-3807852 bp Feature: gene Location: 3807904-3808977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3808129-3808672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38081 29-3808672 bp Feature: gene Location: 3808999-3809724 bp Feature: gene Location: 3810640-3811185 bp Feature: gene Location: 3850886-3851614 bp Feature: domain Description: S2P-M50 Location: 3850919-3851225 bp Feature: domain Description: S2P-M50 Location: 385091 9-3851 225 bp Feature: gene Location: 3851648-3851866 bp Feature: gene Location: 3852248-3853510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3852443-3853058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3852443-3853058 bp Feature: domain Description: GIIM Note: maturase Location: 3853136-3853343 bp Feature: domain Description: GIIM Note: maturase Location: 38531 36-3853343 bp Feature: gene Location: 3853618-3853812 bp Feature: gene Location: 3854100-3854936 bp Feature: domain Description: HTH_ARAC Location: 3854637-3854883 bp Feature: domain Description: HTH_ARAC Location: 3854637-3854883 bp Feature: gene Location: 3857337-3857654 bp Feature: gene Location: 3857900-3858118 bp Feature: gene Location: 3858500-3859762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3858695-3859310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3858695-385931 0 bp Feature: domain Description: GIIM Note: maturase Location: 3859388-3859595 bp Feature: domain Description: GIIM Note: maturase Location: 3859388-3859595 bp Feature: gene Location: 3859870-3860064 bp Feature: gene Location: 3860406-3861350 bp Feature: domain Description: TlpA_like_family Location: 3860928-3861261 bp Feature: domain Description: TlpA_like_family Location: 3860928-3861 261 bp Feature: gene Location: 3861455-3862717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3861650-3862265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3861 650-3862265 bp Feature: domain Description: GIIM Note: maturase Location: 3862343-3862550 bp Feature: domain Description: GIIM Note: maturase Location: 3862343-3862550 bp Feature: gene Location: 3862825-3863019 bp Feature: gene Location: 3863697-3864959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3863892-3864507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3863892-3864507 bp Feature: domain Description: GIIM Note: maturase Location: 3864582-3864792 bp Feature: domain Description: GIIM Note: maturase Location: 3864582-3864792 bp Feature: gene Location: 3865068-3865262 bp Feature: gene Location: 3865534-3866280 bp Feature: gene Location: 3883577-3884371 bp Feature: domain Description: HTH_LUXR Location: 3884201-3884357 bp Feature: domain Description: HTH_LUXR Location: 3884201 -3884357 bp Feature: gene Location: 3884709-3884837 bp Feature: gene Location: 3885725-3886987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3885938-3886604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3885938-3886604 bp Feature: domain Description: GIIM Note: maturase Location: 3886691-3886904 bp Feature: domain Description: GIIM Note: maturase Location: 3886691 -3886904 bp Feature: gene Location: 3887152-3888396 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3887191-3887440 bp Feature: domain Description: Arm-DNA-bind_5 Location: 38871 91 -3887440 bp Feature: domain Description: Phage_int_SAM_5 Location: 3887482-3887797 bp Feature: domain Description: Phage_int_SAM_5 Location: 3887482-3887797 bp Feature: domain Description: INTN1_C_like Location: 3887845-3888331 bp Feature: domain Description: INTN1 _C_like Location: 3887845-3888331 bp Feature: gene Location: 3888966-3889499 bp Feature: domain Description: Bacova_04320_like Location: 3889077-3889344 bp Feature: domain Description: Bacova_04320_like Location: 3889077-3889344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_ARAC (smart00342), NmrA_TMR_like_1_SDR_a (cd05231), Ribonuc_L-PSP (pfam01042), Crp (pfam00325), INT_IntI_C (cd01193), IS285 (COG3328), RpoE (COG3343), HTH_21 (pfam13276)
rve_3 (pfam13683), HTH_Tnp_1 (pfam01527), Lhr (COG1201), F-BAR_GAS7 (cd07649), metH (TIGR02082), YhfA (COG1765), RVT-Retrons, TrxB (COG0492), CysG2 (COG1648), Beta-lactamase (pfam00144)
DUF3471 (pfam11954), HpaA (TIGR02297), retropepsin_like_bacteria (cd05483), PDZ_metalloprotease (cd00989), GSDH (pfam07995), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), S2P-M50 (cl10020), TlpA_like_family (cd02966)
HTH_LUXR (smart00421), Bacova_04320_like (cl17095)