myRT

myRT report for GCA_000745375.1_ASM74537v1

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Seq: JQNS01000004.1 Methylobacter whittenburyi strain UCM-B-3033 GY38DRAFT_scf7180000000023_quiver.4_C, whole genome shotgun sequence (789794 bp)
Overview 1 RT 1: 135996-140909 bp 2 RT 2: 667264-670907 bp Neighborhood of RT #1 [135996, 140909] PRK00329 PRK11112 RVT-GII GIIM DadA Rieske_YhfW_C Neighborhood of RT #2 [667264, 670969] RVT-GII Intron_maturas2 HNHc Tra5 RAYT Feature: gene Location: 135996-136250 bp Feature: domain Description: PRK00329 Location: 135999-136218 bp Feature: domain Description: PRK00329 Location: 1 35999-1 3621 8 bp Feature: gene Location: 136247-136975 bp Feature: domain Description: PRK11112 Location: 136250-136958 bp Feature: domain Description: PRK1 1 1 1 2 Location: 1 36250-1 36958 bp Feature: gene Location: 137105-138355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137315-137930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3731 5-1 37930 bp Feature: domain Description: GIIM Note: maturase Location: 137978-138206 bp Feature: domain Description: GIIM Note: maturase Location: 1 37978-1 38206 bp Feature: gene Location: 139045-140559 bp Feature: domain Description: DadA Location: 139117-140215 bp Feature: domain Description: DadA Location: 1 391 1 7-1 4021 5 bp Feature: domain Description: Rieske_YhfW_C Location: 140299-140545 bp Feature: domain Description: Rieske_YhfW_C Location: 1 40299-1 40545 bp Feature: gene Location: 140577-140909 bp Feature: gene Location: 667264-667437 bp Feature: gene Location: 667508-667642 bp Feature: gene Location: 667854-669713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 668166-668958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6681 66-668958 bp Feature: domain Description: Intron_maturas2 Location: 669063-669282 bp Feature: domain Description: Intron_maturas2 Location: 669063-669282 bp Feature: domain Description: HNHc Note: nucleases Location: 669462-669651 bp Feature: domain Description: HNHc Note: nucleases Location: 669462-669651 bp Feature: gene Location: 669908-670483 bp Feature: domain Description: Tra5 Location: 669911-670319 bp Feature: domain Description: Tra5 Location: 66991 1 -67031 9 bp Feature: gene Location: 670682-670969 bp Feature: domain Description: RAYT Location: 670685-670907 bp Feature: domain Description: RAYT Location: 670685-670907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00329 (GIY-YIG nuclease superfamily protein; Validated), PRK11112 (tRNA pseudouridine synthase C; Provisional), RVT-GII, GIIM (pfam08388), DadA (COG0665), Rieske_YhfW_C (cd03477), Intron_maturas2 (pfam01348), HNHc (smart00507), Tra5 (COG2801), RAYT (COG1943)

Seq: JQNS01000005.1 Methylobacter whittenburyi strain UCM-B-3033 GY38DRAFT_scf7180000000026_quiver.5_C, whole genome shotgun sequence (1718480 bp)
Overview 1 RT 1: 380331-383655 bp 2 RT 2: 844432-849466 bp 3 RT 3: 1691144-1694630 bp Neighborhood of RT #1 [380331, 383655] COG3865 RVT-GII GIIM Neighborhood of RT #2 [844432, 849579] MgtE RVT-GII GIIM BON MJ1255 Neighborhood of RT #3 [1691144, 1694707] HupH_C HupH_C RVT-GII GIIM HyaE hypC_hupF Feature: gene Location: 380331-380816 bp Feature: domain Description: COG3865 Location: 380346-380796 bp Feature: domain Description: COG3865 Location: 380346-380796 bp Feature: gene Location: 381321-381563 bp Feature: gene Location: 381764-382966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381995-382616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381995-382 616 bp Feature: domain Description: GIIM Note: maturase Location: 382661-382880 bp Feature: domain Description: GIIM Note: maturase Location: 382 661-382 880 bp Feature: gene Location: 383182-383502 bp Feature: gene Location: 383191-383655 bp Feature: gene Location: 844432-845883 bp Feature: domain Description: MgtE Location: 844558-845872 bp Feature: domain Description: MgtE Location: 844558-845872 bp Feature: gene Location: 846202-846555 bp Feature: gene Location: 846690-848003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846921-847542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84692 1-847542 bp Feature: domain Description: GIIM Note: maturase Location: 847587-847806 bp Feature: domain Description: GIIM Note: maturase Location: 847587-847806 bp Feature: gene Location: 848193-848510 bp Feature: domain Description: BON Location: 848307-848508 bp Feature: domain Description: BON Location: 848307-848508 bp Feature: gene Location: 848536-849579 bp Feature: domain Description: MJ1255 Location: 848542-849466 bp Feature: domain Description: MJ12 55 Location: 848542 -849466 bp Feature: gene Location: 1691144-1691992 bp Feature: domain Description: HupH_C Location: 1691300-1691576 bp Feature: domain Description: HupH_C Location: 1691300-1691576 bp Feature: domain Description: HupH_C Location: 1691636-1691984 bp Feature: domain Description: HupH_C Location: 1691636-1691984 bp Feature: gene Location: 1692227-1692505 bp Feature: gene Location: 1692641-1693891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692851-1693466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692 851-1693466 bp Feature: domain Description: GIIM Note: maturase Location: 1693514-1693742 bp Feature: domain Description: GIIM Note: maturase Location: 1693514-1693742 bp Feature: gene Location: 1693995-1694414 bp Feature: domain Description: HyaE Location: 1694007-1694334 bp Feature: domain Description: HyaE Location: 1694007-1694334 bp Feature: gene Location: 1694411-1694707 bp Feature: domain Description: hypC_hupF Location: 1694414-1694630 bp Feature: domain Description: hypC_hupF Location: 1694414-1694630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3865 (Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase ), RVT-GII, GIIM (pfam08388), MgtE (pfam01769), BON (smart00749), MJ1255 (TIGR00661), HupH_C (pfam04809), HyaE (pfam07449), hypC_hupF (TIGR00074)

Seq: JQNS01000007.1 Methylobacter whittenburyi strain UCM-B-3033 GY38DRAFT_scf7180000000024_quiver.7_C, whole genome shotgun sequence (1626479 bp)
Overview 1 RT 1: 1502077-1506558 bp Neighborhood of RT #1 [1502077, 1506569] PRK11524 RVT-GII GIIM COG3795 Feature: gene Location: 1502077-1502856 bp Feature: gene Location: 1502849-1503775 bp Feature: domain Description: PRK11524 Location: 1502864-1503554 bp Feature: domain Description: PRK11524 Location: 1502864-1503 554 bp Feature: gene Location: 1504149-1505462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1504380-1505001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15043 80-1505001 bp Feature: domain Description: GIIM Note: maturase Location: 1505046-1505265 bp Feature: domain Description: GIIM Note: maturase Location: 1505046-1505265 bp Feature: gene Location: 1505594-1505947 bp Feature: gene Location: 1506228-1506569 bp Feature: domain Description: COG3795 Location: 1506231-1506558 bp Feature: domain Description: COG3 795 Location: 150623 1-1506558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11524 (adenine-specific DNA-methyltransferase), RVT-GII, GIIM (pfam08388), COG3795 (Uncharacterized conserved protein )