myRT

myRT report for GCA_000745725.1_ASM74572v1

Download annotations/find similar RTs

Seq: JQJW01000010.1 Agrobacterium rhizogenes strain YR147 EX05DRAFT_scaffold00009.9_C, whole genome shotgun sequence (196179 bp)
Overview 1 RT 1: 46250-51183 bp Neighborhood of RT #1 [46250, 51197] TrpB PRK01222 RVT-Retrons YgjP Feature: gene Location: 46250-47368 bp Feature: domain Description: TrpB Location: 46253-47360 bp Feature: domain Description: TrpB Location: 46253-47360 bp Feature: gene Location: 47461-48135 bp Feature: domain Description: PRK01222 Location: 47473-48094 bp Feature: domain Description: PRK01 222 Location: 47473-48094 bp Feature: gene Location: 48245-49117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48398-48926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48398-48926 bp Feature: gene Location: 49553-49753 bp Feature: gene Location: 50058-51197 bp Feature: domain Description: YgjP Location: 50505-51183 bp Feature: domain Description: YgjP Location: 50505-51 1 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrpB (COG0133), PRK01222 (phosphoribosylanthranilate isomerase), RVT-Retrons, YgjP (COG1451)

Seq: JQJW01000020.1 Agrobacterium rhizogenes strain YR147 EX05DRAFT_scaffold00019.19_C, whole genome shotgun sequence (68333 bp)
Overview 1 RT 1: 32819-34860 bp Neighborhood of RT #1 [32819, 34916] HTH_21 HTH_Tnp_1 RVT-GII GIIM Rve Feature: gene Location: 32819-33244 bp Feature: domain Description: HTH_21 Location: 32948-33107 bp Feature: domain Description: HTH_2 1 Location: 32 948-33107 bp Feature: gene Location: 33241-33507 bp Feature: domain Description: HTH_Tnp_1 Location: 33247-33454 bp Feature: domain Description: HTH_Tnp_1 Location: 332 47-33454 bp Feature: gene Location: 33395-34084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33644-33848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33644-33848 bp Feature: domain Description: GIIM Note: maturase Location: 33923-34079 bp Feature: domain Description: GIIM Note: maturase Location: 3392 3-34079 bp Feature: gene Location: 34088-34369 bp Feature: gene Location: 34464-34916 bp Feature: domain Description: Rve Location: 34467-34860 bp Feature: domain Description: Rve Location: 34467-34860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), Rve (COG3316)

Seq: JQJW01000025.1 Agrobacterium rhizogenes strain YR147 EX05DRAFT_scaffold00024.24_C, whole genome shotgun sequence (48272 bp)
Overview 1 RT 1: 33340-38583 bp Neighborhood of RT #1 [33340, 38583] CysQ COG2187 COG0645 group_II_RT_mat RVT-GII RVT-GII Feature: gene Location: 33340-34179 bp Feature: domain Description: CysQ Location: 33370-34093 bp Feature: domain Description: CysQ Location: 3 3 3 70-3 4093 bp Feature: gene Location: 34317-35873 bp Feature: domain Description: COG2187 Location: 34383-35307 bp Feature: domain Description: COG2187 Location: 3 43 83 -3 53 07 bp Feature: domain Description: COG0645 Location: 35319-35808 bp Feature: domain Description: COG0645 Location: 3 53 19-3 5808 bp Feature: gene Location: 36676-37023 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36766-36907 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 6766-3 6907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36907-36976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6907-3 6976 bp Feature: gene Location: 37064-37843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37070-37559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7070-3 7559 bp Feature: gene Location: 38024-38335 bp Feature: gene Location: 38368-38583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CysQ (COG1218), COG2187 (Aminoglycoside phosphotransferase family enzyme ), COG0645 (Predicted kinase ), group_II_RT_mat (TIGR04416), RVT-GII