myRT

myRT report for GCA_000745845.1_ASM74584v1

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Seq: JQKC01000013.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 Q332DRAFT_scaffold00011.11_C, whole genome shotgun sequence (215767 bp)
Overview 1 RT 1: 213044-215758 bp Neighborhood of RT #1 [213044, 215766] TPR TPR RVT-GII GIIM RVT-GII Feature: gene Location: 213044-213706 bp Feature: domain Description: TPR Location: 213107-213323 bp Feature: domain Description: TPR Location: 21 31 07-21 3323 bp Feature: domain Description: TPR Location: 213341-213602 bp Feature: domain Description: TPR Location: 21 3341 -21 3602 bp Feature: gene Location: 213644-213910 bp Feature: gene Location: 214429-215445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214447-214570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4447-21 4570 bp Feature: domain Description: GIIM Note: maturase Location: 214681-214885 bp Feature: domain Description: GIIM Note: maturase Location: 21 4681 -21 4885 bp Feature: gene Location: 215533-215766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215536-215758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 5536-21 5758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII, GIIM (pfam08388)

Seq: JQKC01000040.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 Q332DRAFT_scaffold00037.37_C, whole genome shotgun sequence (34186 bp)
Overview 1 RT 1: 303-4705 bp Neighborhood of RT #1 [303, 4863] DEDD_Tnp_IS110 Transposase_20 RVT-GII YAcAr Feature: gene Location: 303-1469 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 339-810 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 339-810 bp Feature: domain Description: Transposase_20 Location: 1134-1356 bp Feature: domain Description: Transposase_2 0 Location: 1134-1356 bp Feature: gene Location: 1681-2151 bp Feature: gene Location: 2178-3545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472-3183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 472 -3183 bp Feature: gene Location: 3908-4120 bp Feature: gene Location: 4519-4863 bp Feature: domain Description: YAcAr Location: 4522-4705 bp Feature: domain Description: YAcAr Location: 452 2 -4705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, YAcAr

Seq: JQKC01000045.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 Q332DRAFT_scaffold00042.42_C, whole genome shotgun sequence (28414 bp)
Overview 1 RT 1: 3-4247 bp Neighborhood of RT #1 [3, 4285] RNA_ligase RVT-GII group_II_RT_mat M4_TLP Dockerin_I Dockerin_I Feature: gene Location: 3-470 bp Feature: domain Description: RNA_ligase Location: 12-447 bp Feature: domain Description: RNA_ligase Location: 12-447 bp Feature: gene Location: 819-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1053 bp Feature: gene Location: 1265-1540 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1355-1538 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13 55-153 8 bp Feature: gene Location: 2225-4285 bp Feature: domain Description: M4_TLP Location: 2441-3317 bp Feature: domain Description: M4_TLP Location: 2441-3 3 17 bp Feature: domain Description: Dockerin_I Location: 3329-3497 bp Feature: domain Description: Dockerin_I Location: 3 3 29-3 497 bp Feature: domain Description: Dockerin_I Location: 4073-4247 bp Feature: domain Description: Dockerin_I Location: 4073 -4247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNA_ligase (pfam09414), RVT-GII, group_II_RT_mat (TIGR04416), M4_TLP (cd09597), Dockerin_I (cd14256)

Seq: JQKC01000049.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 Q332DRAFT_scaffold00046.46_C, whole genome shotgun sequence (22603 bp)
Overview 1 RT 1: 9330-12055 bp Neighborhood of RT #1 [9330, 12055] INT_RitA_C_like RVT-GII KOG4768 Feature: gene Location: 9330-9851 bp Feature: domain Description: INT_RitA_C_like Location: 9666-9837 bp Feature: domain Description: INT_RitA_C_like Location: 9666-9837 bp Feature: gene Location: 9885-10100 bp Feature: gene Location: 10173-10502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10215-10467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10215-104 67 bp Feature: gene Location: 10553-11092 bp Feature: domain Description: KOG4768 Location: 10559-11084 bp Feature: domain Description: KOG4 768 Location: 10559-11084 bp Feature: gene Location: 11351-12055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: JQKC01000050.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 Q332DRAFT_scaffold00047.47_C, whole genome shotgun sequence (22277 bp)
Overview 1 RT 1: 15153-22275 bp Neighborhood of RT #1 [15153, 22275] TerD RVT-Retrons Feature: gene Location: 15153-18503 bp Feature: domain Description: TerD Location: 15156-15675 bp Feature: domain Description: TerD Location: 15 15 6-15 675 bp Feature: gene Location: 18493-20238 bp Feature: gene Location: 20235-21773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20868-21531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20868-215 31 bp Feature: gene Location: 22090-22275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TerD (pfam02342), RVT-Retrons

Seq: JQKC01000077.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 Q332DRAFT_scaffold00074.74_C, whole genome shotgun sequence (6337 bp)
Overview 1 RT 1: 927-5439 bp Neighborhood of RT #1 [927, 5439] InsE RVT_N RVT-GII GIIM DUF2310 Feature: gene Location: 927-1220 bp Feature: domain Description: InsE Location: 939-1215 bp Feature: domain Description: InsE Location: 939-1215 bp Feature: gene Location: 1272-1604 bp Feature: gene Location: 2083-3735 bp Feature: domain Description: RVT_N Location: 2128-2371 bp Feature: domain Description: RVT_N Location: 2128-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2416-3064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2416 -306 4 bp Feature: domain Description: GIIM Note: maturase Location: 3118-3352 bp Feature: domain Description: GIIM Note: maturase Location: 3118-3352 bp Feature: gene Location: 4479-5237 bp Feature: domain Description: DUF2310 Location: 4491-5229 bp Feature: domain Description: DUF2310 Location: 4491-5229 bp Feature: gene Location: 5293-5439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2310 (pfam10071)