myRT

myRT report for GCA_000745905.1_ASM74590v1

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Seq: KN050778.1 Ferrimicrobium acidiphilum DSM 19497 genomic scaffold Q367DRAFT_scaffold00005.5, whole genome shotgun sequence (107918 bp)
Overview 1 RT 1: 50631-58984 bp Neighborhood of RT #1 [50631, 59604] GT2_RfbC_Mx_like GT_2_like_c RVT-GII GT2_RfbC_Mx_like GT2_RfbC_Mx_like GT_2_like_b Feature: gene Location: 50631-53006 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 51006-51606 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 51 006-51 606 bp Feature: domain Description: GT_2_like_c Location: 51933-52410 bp Feature: domain Description: GT_2_like_c Location: 51 933-5241 0 bp Feature: gene Location: 53566-53910 bp Feature: gene Location: 53912-55381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54320-55010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54320-5501 0 bp Feature: gene Location: 55596-55757 bp Feature: gene Location: 55882-59604 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 57544-58141 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 57544-581 41 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 58297-58573 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 58297-58573 bp Feature: domain Description: GT_2_like_b Location: 58795-58984 bp Feature: domain Description: GT_2_like_b Location: 58795-58984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT2_RfbC_Mx_like (cd04184), GT_2_like_c (cd04186), RVT-GII, GT_2_like_b (cd04185)

Seq: JQKF01000033.1 Ferrimicrobium acidiphilum DSM 19497 Q367DRAFT_scaffold00032.32_C, whole genome shotgun sequence (29762 bp)
Overview 1 RT 1: 71-3522 bp Neighborhood of RT #1 [71, 3584] COG3547 RVT-GII HTH_ARSR Feature: gene Location: 71-1129 bp Feature: domain Description: COG3547 Location: 113-1103 bp Feature: domain Description: COG3547 Location: 113-1103 bp Feature: gene Location: 1375-1578 bp Feature: gene Location: 1820-2323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2147-2294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 147-2 2 94 bp Feature: gene Location: 2370-2813 bp Feature: gene Location: 3288-3584 bp Feature: domain Description: HTH_ARSR Location: 3348-3522 bp Feature: domain Description: HTH_ARSR Location: 3348-352 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, HTH_ARSR (smart00418)

Seq: JQKF01000058.1 Ferrimicrobium acidiphilum DSM 19497 Q367DRAFT_scaffold00056.56_C, whole genome shotgun sequence (13019 bp)
Overview 1 RT 1: 6527-10593 bp Neighborhood of RT #1 [6527, 10593] RVT-GII GIIM DUF4157 Feature: gene Location: 6527-6670 bp Feature: gene Location: 6717-6899 bp Feature: gene Location: 7219-7686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7231-7348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723 1-73 48 bp Feature: domain Description: GIIM Note: maturase Location: 7432-7642 bp Feature: domain Description: GIIM Note: maturase Location: 743 2-7642 bp Feature: gene Location: 8252-9826 bp Feature: domain Description: DUF4157 Location: 8684-8906 bp Feature: domain Description: DUF4157 Location: 8684-8906 bp Feature: gene Location: 10366-10593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4157 (pfam13699)