myRT

myRT report for GCA_000745975.1_ASM74597v1

Download annotations/find similar RTs

Seq: JQKJ01000001.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00001.1_C, whole genome shotgun sequence (400161 bp)
Overview 1 RT 1: 1530-6631 bp Neighborhood of RT #1 [1530, 6642] YfmG Hrd RVT-DGRs YfmG Feature: gene Location: 1530-4223 bp Feature: domain Description: YfmG Location: 3540-4209 bp Feature: domain Description: YfmG Location: 3540-4209 bp Feature: gene Location: 4269-4805 bp Feature: domain Description: Hrd Location: 4569-4761 bp Feature: domain Description: Hrd Location: 4569-4761 bp Feature: gene Location: 4830-5504 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5013-5298 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 501 3-5298 bp Feature: gene Location: 5511-5756 bp Feature: gene Location: 5827-6642 bp Feature: domain Description: YfmG Location: 5968-6631 bp Feature: domain Description: YfmG Location: 5968-6631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs

Seq: JQKJ01000036.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00036.35_C, whole genome shotgun sequence (30316 bp)
Overview 1 RT 1: 22264-26975 bp Neighborhood of RT #1 [22264, 27373] PqqD AsnB eps_aminotran_1 RVT-UG4 HprK_C Feature: gene Location: 22264-22593 bp Feature: domain Description: PqqD Location: 22348-22537 bp Feature: domain Description: PqqD Location: 2 2 348-2 2 537 bp Feature: gene Location: 22776-24734 bp Feature: domain Description: AsnB Location: 22797-23784 bp Feature: domain Description: AsnB Location: 2 2 797-2 3784 bp Feature: domain Description: eps_aminotran_1 Location: 24324-24684 bp Feature: domain Description: eps_aminotran_1 Location: 2 432 4-2 4684 bp Feature: gene Location: 24739-25761 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 25123-25546 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 512 3-2 5546 bp Feature: gene Location: 26200-26394 bp Feature: gene Location: 26459-27373 bp Feature: domain Description: HprK_C Location: 26810-26975 bp Feature: domain Description: HprK_C Location: 2 6810-2 6975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PqqD (pfam05402), AsnB (COG0367), eps_aminotran_1 (TIGR03108), RVT-UG4, HprK_C (cd01918)

Seq: JQKJ01000061.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00061.60_C, whole genome shotgun sequence (5742 bp)
Overview 1 RT 1: 3-5640 bp Neighborhood of RT #1 [3, 5663] RVT_N RVT-GII GIIM RVT-GII GIIM His_Ser_Rich DDE_Tnp_1_3 Feature: gene Location: 3-1271 bp Feature: domain Description: RVT_N Location: 60-297 bp Feature: domain Description: RVT_N Location: 60-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 48-999 bp Feature: domain Description: GIIM Note: maturase Location: 1050-1266 bp Feature: domain Description: GIIM Note: maturase Location: 1050-1266 bp Feature: gene Location: 1802-1963 bp Feature: gene Location: 2353-2532 bp Feature: gene Location: 2563-3873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2833-3451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283 3 -3 451 bp Feature: domain Description: GIIM Note: maturase Location: 3502-3733 bp Feature: domain Description: GIIM Note: maturase Location: 3 502-3 73 3 bp Feature: gene Location: 4226-4846 bp Feature: domain Description: His_Ser_Rich Location: 4622-4793 bp Feature: domain Description: His_Ser_Rich Location: 4622-4793 bp Feature: gene Location: 4863-5663 bp Feature: domain Description: DDE_Tnp_1_3 Location: 5187-5640 bp Feature: domain Description: DDE_Tnp_1_3 Location: 5187-5640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), His_Ser_Rich (TIGR03979), DDE_Tnp_1_3 (pfam13612)

Seq: JQKJ01000071.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00072.70_C, whole genome shotgun sequence (2792 bp)
Overview 1 RT 1: 62-2017 bp Neighborhood of RT #1 [62, 2064] RVT-GII VOC_like Feature: gene Location: 62-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1010 bp Feature: gene Location: 1101-1544 bp Feature: gene Location: 1669-2064 bp Feature: domain Description: VOC_like Location: 1684-2017 bp Feature: domain Description: VOC_like Location: 1684 -2017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VOC_like (cd16355)